DC887616

Overview
NameDC887616
Unique NameDC887616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4015 contig Csv1_Contig4015:135..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887616 vs. ExPASy Swiss-Prot
Match: UGPI5_ARATH (Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.707e-32
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = -1 
Query:  381 ECSEYLQKTMACLDFARGKITTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMVKNLGVQVPKLLQLPSACQLKNASTSLCPKLLGLSPSSPDAAIFTN 686
            EC++  QK   CLDFA GK T PSK+CC AV+ IK+ DPKCLC++I++A  G G  +K+LGVQ  KL+QLP++CQL NAS + CPKLLG+SPSSPDAA+FTN
Sbjct:   34 ECNQDFQKVTLCLDFATGKATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTG-GQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISPSSPDAAVFTN 134
The following BLAST results are available for this feature:
BLAST of DC887616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI5_ARATH5.707e-3262.75Uncharacterized GPI-anchored protein At1g27950 OS=... [more]
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Properties
Property NameValue
Genbank descriptionDC887616 EIC Citrus sinensis cDNA clone EIC0633 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887616 ID=DC887616; Name=DC887616; organism=Citrus sinensis; type=EST; length=884bp
ATTTAATTTACTTCTATCTAATATTATGTAAACAAGATAAGCAGAAACAC
AGGCCTGGAAAATCTATAAAACACCTGGATGCACAATGTCATAGAGTCAG
GAAGACAAAGAACATAGTCATAAAGTCCAAACAACATTGCAAGAAAGGAA
TAACAAGAAGCTGCTTCACTACTTGAGCGAATTCTCAATTTTCGACGCCA
TATGTGCTGTTGTTAAGCACATAAAGAAGCAGACCCAGTTGGGAACGCAT
AGAAAAAGATAGACATTGCTATGATCACCGTCGGTCCAAGGAGGTATGGT
CCGTGCATGTTCCCAGACGATCCGTCAGATGCTGATGTTCCCGCGGCCGC
TGGTGTAGTTGGAGTTGCCGATGAAGAAGTATTTGTGAATATTGCAGCAT
CTGGAGAGCTAGGAGATAGCCCTAGAAGCTTTGGGCAGAGACTGGTGCTG
GCATTTTTCAACTGGCAAGCGGATGGAAGCTGAAGCAGCTTAGGCACCTG
CACGCCCAAGTTCTTAACCATATCGCCTTCACCGCCATTAGCCTCCTTGA
TGATATAACACAAACACTTTGGATCATCGTCTTTTATACCCTTCACAGCG
CTGCAACATTCTTTGGACGGAGTCGTAATCTTCCCCCTTGCAAAATCCAA
ACAGGCCATCGTCTTCTGCAAATACTCACTACACTCCTTATTTGTAGCGT
CATCAGCCGTTACAACCCTTAACGCTATGAAGCCAAACAATATGCCACAT
AGAAACCCCTTTTTTCATTCCCATCATCTTCTCGCTTTTGCCCTCTTTCC
TTTTTCCTTTGTTGCTGCGATAAATGATTTTTATTGTCNATTGAATTTCA
TANAAGTACGTCCCCCGGCCGTAATGGCCGAATT
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