DC887608

Overview
NameDC887608
Unique NameDC887608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length369
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887608_ssr43 microsatellite DC887608_ssr43:43..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7491 contig Csv1_Contig7491:339..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887608 vs. ExPASy Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.081e-14
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = -1 
Query:  139 LGLLSLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC 303
            +GL  LVMLA+MSFN GVFLVA+AGH  GF +FGS+ F  +S   KT+ +PP  C
Sbjct:  114 IGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGC 168

HSP 2 Score: 29.261 bits (64), Expect = 1.081e-14
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = -3 
Query:  290 DANHVAAGLIQTLLHAIRVGLAF 358
            D+ + AAGLIQT ++ +R+GLA+
Sbjct:   96 DSANRAAGLIQTAVYTLRIGLAY 118
The following BLAST results are available for this feature:
BLAST of DC887608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPT1_ARATH1.081e-1458.18Copper transporter 1 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionDC887608 EIC Citrus sinensis cDNA clone EIC0624 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887608 ID=DC887608; Name=DC887608; organism=Citrus sinensis; type=EST; length=369bp
ACCATTTCTTCATATTCAGTTTCTACAGATAGTTTCAGAGAGAAGAAAGA
AAGAAAGAAATTAAGAGTTACAAGATAAACTACAAAGCCAAACTCAAGAA
CATACTTAACTCTTAGTAATCAGCTATTAATTATATCAACAACTCATGGG
AGGAAGATCAGAGGTTTTTGGAGGGGGTGATGATTTATTAAAAACCCTGC
TGCCAAAAATAAAGAATCCAAAAGTATGACCAGCAACAGCCACCAAAAAC
ACACCTCCATTAAAGGACATAATAGCAAGCATCACCAAAGAAAGCAAGCC
CAACCCTGATTGCATGTAAAAGAGTCTGAATCAAACCAGCAGCCACATGA
TTTGCATCAGGCTTCATCA
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