DC887605

Overview
NameDC887605
Unique NameDC887605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.771e-36
Identity = 73/162 (45.06%), Postives = 109/162 (67.28%), Query Frame = -1
Query:  170 LVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFYEEVDEKVIKKLKSK 655
            LVST+ W+LL  Y F  +T+ SW+ +++VS  FL GS++RLL K  P+LSGLE+SE+  +E   S R ++EE  RWMF V  E +WFVFA+ V G  +LS +    D  T L+ G+VMG+TVP ++E+YGD+I++   + K KS+  Y    EK++ ++K+K
Sbjct:   33 LVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKIL-EMKNK 193          
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 48/157 (30.57%), Postives = 88/157 (56.05%), Query Frame = -1
Query:  179 STAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFYEEVDEKVIKKL 649
            +TA WV+ E+ +++ LT+   + + +++  FL  +    + K PPK+  + I E+  L++A+  R  +      +  ++  +    F  A+AGL VLS +    + LTL Y  +V+  TVP+ Y+KY DK+   GE A ++ ++ Y  +DEKV+ K+
Sbjct:  108 ATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKI 264          
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.410e-17
Identity = 50/159 (31.45%), Postives = 85/159 (53.46%), Query Frame = -1
Query:  170 TAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFYEEVDEKVIKKLKSK 646
            TA WVL E+++++ L      A+  ++  FL  +    + K  P +  + I E   L++ +  R  +      + +++  K    F   +AGL VLS + +  + LTL YT  V+  T+PV+YEKY DK+   GE A  + ++ Y  +DEKV++K+ SK
Sbjct:   88 TASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISK 246          
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 50/160 (31.25%), Postives = 85/160 (53.12%), Query Frame = -1
Query:  170 STAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFYEEVDEKVIKKLKSK 649
            +T  W+L E+ ++N LT+   +++  ++  FL  S    + K P  +  + I E   L++A+  R  +      +  ++  +    F   +AGL VLS V +  + LTL+Y   V+  T+PV+YEKY DK+   GE A  + ++ Y E D KV+ K+ SK
Sbjct:   83 ATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSK 242          
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 47/158 (29.75%), Postives = 87/158 (55.06%), Query Frame = -1
Query:  179 VSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFYEEVDEKVIKKL 652
            V+TAIWVL E+ +++FL++   + +  ++  FL  +    + K PPK+  + I E+  L + ++ R  + +    +  +++ +    F   V GL ++S V  + + LTL+Y   V+  TVP++YEK+ DK+    E    + ++ Y   DEKV+ KL
Sbjct:   86 VATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKL 243          
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 47/157 (29.94%), Postives = 82/157 (52.23%), Query Frame = -1
Query:  179 STAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFYEEVDEKVIKKL 649
            +T  WVL E+ +++ LT+   + +  ++  FL  +    + K PPK+  + I E+  L++A+  R  +      +  ++  +    F  A+AGL VLS +      LTL Y  +V+  TVP+ Y+KY DK+   GE A  + ++ Y  +D KV  K+
Sbjct:  104 ATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKI 260          
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.659e-16
Identity = 47/158 (29.75%), Postives = 89/158 (56.33%), Query Frame = -1
Query:  179 VSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFYEEVDEKVIKKL 652
            V+TAIWVL E+ +++ L++   +++  +   FL  +   L+ K  P++  + + E++ L VA+S R  + +    +  +++ +    F   V GL ++S V  + + LTL+Y   V+  TVP++YEK+ DK+    E A  + ++ Y   DEKV+ K+
Sbjct:   86 VATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKI 243          
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 45/159 (28.30%), Postives = 81/159 (50.94%), Query Frame = -1
Query:  179 LVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFYEEVDEKVIKKL 655
            ++ST  W++ E     FL+V+S + + ++  +F+   +     ++   L  L +SE+     A SFR  +         V+V   + +F + V  L +LS + ++  L TLLY G ++ +T+P +Y KY  K+ +C  T   +    Y+ VDE VI +L
Sbjct:   58 IISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRL 216          
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 40/154 (25.97%), Postives = 77/154 (50.00%), Query Frame = -1
Query:  179 IWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFYEEVDEKVIKKL 640
            +W L+EV ++NF+T+    +M+ + F F+  +    L  E P +  + + E S  ++A SF     +    +  V+  +   +F      L ++S + T+ + + LL+ G V   T+PV+YE Y D +         K ++ Y++VD  V+ K+
Sbjct:   61 LWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKI 214          
BLAST of DC887605 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 39/147 (26.53%), Postives = 71/147 (48.30%), Query Frame = -1
Query:  212 VSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKQWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKYGDKIKRCGETAKVKSRRFY 652
            V+ A W++ E + +   T+ S + + ++S  FL      +L +  P L   +ISE  A E +   R  V +  +    +++ +   ++ +    L +LS + +  D  TL +T +++ MTVP  YE+Y D I    E    K+R  Y
Sbjct:   42 VTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFICNKTRELY 188          
The following BLAST results are available for this feature:
BLAST of DC887605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RTNLM_ARATH1.771e-3645.06Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]
RTNLA_ARATH3.710e-1830.57Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.410e-1731.45Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH4.102e-1731.25Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH5.357e-1729.75Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH2.036e-1629.94Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH2.659e-1629.75Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH2.251e-1528.30Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLI_ARATH2.751e-1325.97Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH9.785e-1126.53Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionDC887605 EIC Citrus sinensis cDNA clone EIC0620 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887605 ID=DC887605; Name=DC887605; organism=Citrus sinensis; type=EST; length=655bp
TCTATTATCGACAGCTGATAGAGAAGTTCATTAAATATAAAAAGGAAAAT
GTACATTGCTTAAATAATATTATAAATACGAAATTAAGAGCCATGCATGC
ATGCATGCAGAGATGCAATTACTACTCGATCTTCTTCTCCTTGATCTCCT
CTTTGTCTTTGGTGACAAACTTGCTCTTCAATTTCTTAATTACCTTCTCA
TCGACCTCCTCGTAAAATCTCCTTGATTTCACCTTCGCCGTCTCCCCGCA
TCTCTTTATTTTATCCCCATATTTTTCATATATCACAGGAACCGTCATCC
CCATCACAATTCCCGTGTAAAGGAGAGTAAGCAGATCAGAAAATGTGGCC
ACATAGGAGAGCACTAGCAATCCAGCAACTGCTTGAGCAAAAACAAACCA
CTGTTTCTCAACACTCACATGAAACATCCATCTTGTAAATTCCTCAACCA
CTCCTCTAAAGGAATTCGCAACTTCCAAAGCTGACTTCTCAGAAATCTCC
AATCCCGACAACTTCGGTGGTTCTTTGCCAAGAAGTCTCATAATGCTTCC
AGAGAGAAAGGTGAAAGAAACAATGGACATTGCAAGCCACGAAGCCACAG
TGAGGAAGTTAAATTGATAGACCTCCAGCAGCACCCAAATAGCTGTTGAA
ACCAA
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