DC887604

Overview
NameDC887604
Unique NameDC887604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig30 contig Csv1_Contig30:121..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497B_VITVI (UPF0497 membrane protein 11 OS=Vitis vinifera GN=GSVIVT00035166001 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.182e-66
Identity = 128/182 (70.33%), Postives = 142/182 (78.02%), Query Frame = -2
Query:   86 EINEDGN-AALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACSGKNIEVAAFH 628
            E +E GN +++RT E + R              LKNS+T+DFGSLSYSDLGAFRYLVHANGICAGYSLLSAI  AMPRP TMS+AWTFF LDQ+LTYLILAAGAVSTEV+YL  KGD A+TWS  C SFGGFC K  AS+ ITFV V CY VLSLISSYKLFSKYDAPI  +GK IE+AAFH
Sbjct:   23 EGDESGNKSSMRTVETLLRLVPVALCTVSLVVMLKNSQTNDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIFTAMPRPPTMSRAWTFFLLDQVLTYLILAAGAVSTEVVYLAYKGDEAVTWSDACSSFGGFCQKTTASISITFVTVLCYAVLSLISSYKLFSKYDAPICFNGKGIEIAAFH 204          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497G_RICCO (UPF0497 membrane protein 16 OS=Ricinus communis GN=RCOM_0477780 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.073e-66
Identity = 124/176 (70.45%), Postives = 142/176 (80.68%), Query Frame = -2
Query:   86 NAALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAP-IACSGKNIEVAAFH 610
            + ++RTAE + R              LKNS+T+DFG+LSYSDLGAFRYLVHANGICAGYSLLSAII AMPRPSTMS+AWTFFFLDQ+LTY+ILAA AVS E LYL RKGD+AITWSA C SFGGFCHKAI S +ITF+ V CY +LSL+SSYKLFS+Y AP ++  GK IEVAAFH
Sbjct:   29 SGSMRTAETVLRLVPMAFCISALVLMLKNSQTNDFGTLSYSDLGAFRYLVHANGICAGYSLLSAIIVAMPRPSTMSRAWTFFFLDQVLTYVILAAAAVSVEALYLARKGDIAITWSAACVSFGGFCHKAITSAVITFIVVVCYALLSLVSSYKLFSRYGAPDVSYPGKGIEVAAFH 204          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497_GOSHI (UPF0497 membrane protein f16 OS=Gossypium hirsutum GN=F16 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.166e-64
Identity = 122/190 (64.21%), Postives = 146/190 (76.84%), Query Frame = -2
Query:   83 MMGSRAHQEINEDGNAALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACSGKNIEVAAFHG 652
            +MGS  ++  N++ N ++RTAE + R              LKNS+++DFGS+SYSDLGAFRYLVHANGICAGYSLLSAIIAA+P PSTM +AWTFF LDQ+LTY+IL A AVSTEVLYL  KGD AITWSA CG+F GFCHKA  +V+ITFVAV CY VLSL+SSY+LF+K+DAP+    K IE   FHG
Sbjct:   20 LMGSSRNE--NQEVNTSMRTAETMLRLVPMALGVAALVVMLKNSQSNDFGSVSYSDLGAFRYLVHANGICAGYSLLSAIIAAVPSPSTMPRAWTFFLLDQILTYVILGAAAVSTEVLYLANKGDSAITWSAACGTFAGFCHKATIAVVITFVAVICYAVLSLVSSYRLFTKFDAPVNYPSKTIEATVFHG 207          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497F_SOYBN (UPF0497 membrane protein 15 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.742e-60
Identity = 118/182 (64.84%), Postives = 138/182 (75.82%), Query Frame = -2
Query:   83 EINEDGNAALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACSGKNIEVAAFHG 628
            E+  +  +ALRTAE   R              LK+S+ +++GS+ YSDLGAFRYLVHANGICAGYSL SA+IAAMP PST+ +AWTFF LDQ+LTY+ILAAGAVSTEVLYL   GD A TWS+ CGSFG FCHK  ASV ITFVAV CYV+LSL+SSYKLF+KYDAP +   + IEVAAF G
Sbjct:   25 ELEGNTTSALRTAETFLRLFPVGLCVSALVLMLKSSQQNEYGSVDYSDLGAFRYLVHANGICAGYSLFSAVIAAMPCPSTIPRAWTFFLLDQVLTYIILAAGAVSTEVLYLAENGDAATTWSSACGSFGRFCHKVTASVAITFVAVFCYVLLSLVSSYKLFTKYDAPASRPTEAIEVAAFPG 206          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4973_ARATH (UPF0497 membrane protein At1g17200 OS=Arabidopsis thaliana GN=At1g17200 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.440e-56
Identity = 116/179 (64.80%), Postives = 134/179 (74.86%), Query Frame = -2
Query:   89 EDGNAALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPS-TMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAP-IACSGKNIEVAAF 619
            E+ +  +RTAE + R              LK+SET++FGS+SYS+L AFRYLVHANGICAGYSLLSA IAAMPR S TM + WTFF LDQLLTYL+LAAGAVS EVLYL   GD AITWS  C S+GGFCH+A ASVIITF  V  Y+VLSLISSYKLF+++D P I  S KN+EVA F
Sbjct:   24 EETSLGIRTAETMLRLAPVGLCVAALVVMLKDSETNEFGSISYSNLTAFRYLVHANGICAGYSLLSAAIAAMPRSSSTMPRVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDACSSYGGFCHRATASVIITFFVVCFYIVLSLISSYKLFTRFDPPSIVDSAKNLEVAVF 202          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497G_SOYBN (UPF0497 membrane protein 16 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.293e-51
Identity = 103/174 (59.20%), Postives = 122/174 (70.11%), Query Frame = -2
Query:   83 LRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAP-IACSGKNIEVAAFHG 601
            LR  E   R              LKNS+ + +GS+SY+DLGAFRYLVHANGICAGYSL SAI  A+PR S++  AWTFF LDQ+LTY+IL+AGA S EVLYL  KG++A  WS+ C SFG FCHK  AS  ITFV V  YV+LSLISSYKLFSKYDAP ++      ++ AFHG
Sbjct:   35 LRVVETFLRLFPIGLCVTALVIMLKNSQENKYGSVSYTDLGAFRYLVHANGICAGYSLFSAIFVALPRLSSVHIAWTFFVLDQVLTYIILSAGAASAEVLYLAEKGNMATAWSSACRSFGPFCHKVTASTTITFVVVVFYVLLSLISSYKLFSKYDAPTVSNPSMGADIVAFHG 208          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497C_ORYSJ (UPF0497 membrane protein Os04g0281900 OS=Oryza sativa subsp. japonica GN=Os04g0281900 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.609e-48
Identity = 97/188 (51.60%), Postives = 125/188 (66.49%), Query Frame = -2
Query:   89 MGSRAHQEINEDGNAALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACSG-KNIEVAAF 649
            M S    + +    A +R  E + R              L+NS T+++G++SYSDLG F+YLV+ANG+CA YSL SA   A+PRP+T+S++W  F LDQ+ TYLILAAGA S E+LYL   GD  +TWS  CG FGGFC +A  SV ITF +VACY++LSLISSY+LFS YD P    G K +E+AAF
Sbjct:   20 MQSSGDLQASSAAAARVRPVETLLRAAPLGLCVAAMAIMLRNSVTNEYGTVSYSDLGGFKYLVYANGLCAAYSLASAFYIAVPRPATLSRSWVVFLLDQVFTYLILAAGAASAELLYLAYNGDKEVTWSEACGVFGGFCRQARTSVAITFASVACYILLSLISSYRLFSAYDPPQPSLGNKGVEIAAF 207          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4977_MAIZE (UPF0497 membrane protein 7 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.015e-45
Identity = 88/179 (49.16%), Postives = 121/179 (67.60%), Query Frame = -2
Query:   89 EDGNAALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAP--IACSGKNIEVAAF 619
            E   A +R  E + R              L+N +++++G+++YSDLG F+YLV+ANG+CA YSL+SA   A+PRP+T+S++W  F LDQ+ TYLILAAGA + E+LYL   GD  +TWS  CG FG FC +A  SV ITF  V C+++LSLISSY+LFS Y+AP   A   K +E+AA+
Sbjct:   33 EAAAARVRPVETLLRAAPLGLCVAAMTVMLRNQQSNEYGAVAYSDLGGFKYLVYANGLCAAYSLVSAFYTAVPRPATVSRSWLVFLLDQVFTYLILAAGAAAAELLYLAYNGDKEVTWSEACGVFGSFCRQARTSVAITFGTVLCFILLSLISSYRLFSAYEAPPSSALGSKGVEIAAY 211          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497D_SORBI (UPF0497 membrane protein Sb06g005640 OS=Sorghum bicolor GN=Sb06g005640 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.750e-44
Identity = 87/179 (48.60%), Postives = 121/179 (67.60%), Query Frame = -2
Query:   89 EDGNAALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAP--IACSGKNIEVAAF 619
            E   A +R  E + R              L++ +++++G+++YSDLG F+YLV+ANG+CA YSL+SA   A+PRP+T+S++W  F LDQ+ TYLILAAGA + E+LYL   GD  +TWS  CG FG FC +A  SV ITF  V C+++LSLISSY+LFS Y+AP   A   K +E+AA+
Sbjct:   28 EAAAARVRPVETLLRAAPLGLCVAAMTVMLRDQQSNEYGTVAYSDLGGFKYLVYANGLCAAYSLVSAFYTAVPRPATVSRSWVVFLLDQVFTYLILAAGAAAAELLYLAYNGDKEVTWSEACGVFGSFCRQARTSVAITFGTVLCFILLSLISSYRLFSAYEAPPSSALGSKGVEIAAY 206          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4978_MAIZE (UPF0497 membrane protein 8 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.092e-44
Identity = 86/174 (49.43%), Postives = 119/174 (68.39%), Query Frame = -2
Query:   89 ALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDA--PIACSGKNIEVAAF 604
            A R  E + R              L++ +++++G+++YSDLG F+YLV+ANG+CA YSL SA   A+PRP+T+S++W  F LDQ+ TYLILAAGA + E+LYL   GD  +TWS  CG FG FC +A  SV ITF AV C+++LSL+SSY+LFS Y+A  P A   K +E+AA+
Sbjct:   34 AARPIETLLRAAPLVLCVAAMTLMLRDQQSNEYGTVAYSDLGGFKYLVYANGLCAAYSLASAFYTAVPRPATVSRSWVVFLLDQVFTYLILAAGAAAAELLYLAYNGDKEVTWSEACGVFGSFCRQARISVAITFGAVLCFILLSLLSSYRLFSAYEAPPPSALGSKGVEIAAY 207          
The following BLAST results are available for this feature:
BLAST of DC887604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
U497B_VITVI6.182e-6670.33UPF0497 membrane protein 11 OS=Vitis vinifera GN=G... [more]
U497G_RICCO8.073e-6670.45UPF0497 membrane protein 16 OS=Ricinus communis GN... [more]
U497_GOSHI1.166e-6464.21UPF0497 membrane protein f16 OS=Gossypium hirsutum... [more]
U497F_SOYBN1.742e-6064.84UPF0497 membrane protein 15 OS=Glycine max PE=2 SV... [more]
U4973_ARATH4.440e-5664.80UPF0497 membrane protein At1g17200 OS=Arabidopsis ... [more]
U497G_SOYBN3.293e-5159.20UPF0497 membrane protein 16 OS=Glycine max PE=2 SV... [more]
U497C_ORYSJ2.609e-4851.60UPF0497 membrane protein Os04g0281900 OS=Oryza sat... [more]
U4977_MAIZE6.015e-4549.16UPF0497 membrane protein 7 OS=Zea mays PE=2 SV=1[more]
U497D_SORBI1.750e-4448.60UPF0497 membrane protein Sb06g005640 OS=Sorghum bi... [more]
U4978_MAIZE5.092e-4449.43UPF0497 membrane protein 8 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887604 EIC Citrus sinensis cDNA clone EIC0619 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887604 ID=DC887604; Name=DC887604; organism=Citrus sinensis; type=EST; length=653bp
ATGCATTAACACAAACAAGCACTTGCATGGAGTAACTTGAGCAAACACAA
TATATCGCATCAAACTGAGTGAGCGATCATCAGCCATGGAAGGCGGCAAC
CTCAATATTCTTGCCCGAGCAGGCGATAGGCGCGTCGTATTTGCTGAAGA
GTTTATAAGAGGAGATGAGCGAAAGAACAACATAGCAAGCCACTGCAACA
AATGTAATTATCACTGATGCTATAGCTTTATGACAGAATCCACCAAATGA
ACCACAGACTGCGCTCCAAGTGATGGCTAAATCTCCCTTGCGTTCCAGGT
ACAGCACCTCCGTCGACACGGCTCCAGCCGCCAGAATCAAGTAAGTGAGC
AACTGATCAAGGAAAAAGAAAGTCCAGGCTTGAGACATGGTGGAGGGACG
AGGCATGGCTGCAATAATTGCTGAAAGAAGCGAATAGCCTGCACAAATGC
CATTGGCATGCACTAAATACCTGAAGGCTCCAAGGTCGGAGTAAGAAAGA
GAGCCAAAGTCACTAGTCTCAGAGTTCTTAAGCATGAGCACAAGTGCAGC
AACACAGAGAGCCATTGGCACCAAACGTGCAATGGGCTCAGCTGTGCGCA
AGGCAGCGTTGCCATCCTCATTGATCTCTTGATGAGCCCTCGATCCCATC
ATT
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