DC887603

Overview
NameDC887603
Unique NameDC887603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887603 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.581e-25
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = -2
Query:  358 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 534
            RV+AFDRHCNMVLENV+EMWTELP+TGKGKKK  PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct:   54 RVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112          
BLAST of DC887603 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.008e-25
Identity = 51/59 (86.44%), Postives = 58/59 (98.31%), Query Frame = -2
Query:  358 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 534
            RV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   55 RVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of DC887603 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.008e-25
Identity = 51/59 (86.44%), Postives = 58/59 (98.31%), Query Frame = -2
Query:  358 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 534
            RV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   55 RVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of DC887603 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.008e-25
Identity = 51/59 (86.44%), Postives = 58/59 (98.31%), Query Frame = -2
Query:  358 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 534
            RV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   55 RVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of DC887603 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.025e-24
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = -2
Query:  358 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 534
            RVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct:   46 RVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104          
BLAST of DC887603 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.933e-23
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = -2
Query:  358 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 534
            RV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA  V KDRFISKMFLRGDSVI+V++NP
Sbjct:   55 RVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113          
BLAST of DC887603 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.752e-16
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = -2
Query:  358 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 534
            RV+AFDRH NMVLENV+EMWTE  +T  G KK   +NKDRFISKMFLRGD V++V+R P
Sbjct:   56 RVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113          
BLAST of DC887603 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = -2
Query:  358 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 534
            RV+AFDRHCNMVLENV+E+WTE       KK    +N++RFISK+FLRGDSVI+VL+ P
Sbjct:   57 RVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108          
The following BLAST results are available for this feature:
BLAST of DC887603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME1.581e-2589.83Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE6.008e-2586.44Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN6.008e-2586.44Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN6.008e-2586.44Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_DICDI1.025e-2486.44Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_CAEEL1.933e-2384.75Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO1.752e-1669.49Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST9.615e-1564.41Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionDC887603 EIC Citrus sinensis cDNA clone EIC0618 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887603 ID=DC887603; Name=DC887603; organism=Citrus sinensis; type=EST; length=535bp
TGAAACTATTGTATATGCAGGTGTCGANTGGGGAATCACGAGGCTTATGG
CTCACCCTTCCGGATCAAGATTTTAATAAAAGTAAACGAGCATTAGAAGT
AGAAAATAGTAAAGAGCTACACACCATAACATCTCTAGTCCATTGAATTT
ACAACACACCAAAAAAGTCACCCTTATGTCAGGACACCTAAGATACTCCA
ACCAATCTCCCAAACTTGGCAGCACAAATACCATGCGAACATCCTTCAAA
CAAATCTAGGCTTGCTGGCTCATTTTTTACCCATCACAAACAGTATTGTC
CGTATAGATCTTTCGTTAAAATTGCTGAGGCTGTCAAGCAAGGTGTGTAC
TTCACTTGGGATTCCTAAGAACAATGATCACAGAATCTCCTCGGAGAAAC
ATCTTACTGATGAATCTATCCTTGTTAACTGGAAGAGCCTTTTTCTTGCC
TTTCCCAGTCTTAGGCAACTCAGTCCACATCTCCCTGACATTCTCAAGAA
CCATATTGCAATGACGATCAAAAGCTCTCACACGA
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