DC887601

Overview
NameDC887601
Unique NameDC887601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887601_ssr111 microsatellite DC887601_ssr111:111..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:247..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.939e-17
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:   37 AAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.309e-15
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            +ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   60 SARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.808e-15
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 336
            ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   62 ARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.808e-15
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA+TT DRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   62 AAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.483e-15
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 336
            ARTT DRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   64 ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.890e-14
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 336
            ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:   38 ARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.468e-14
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKISP+TDC+RV
Sbjct:   66 AARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 336
            ARTT DRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   38 ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 336
            ARTT DR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   38 ARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.210e-14
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   68 AARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
The following BLAST results are available for this feature:
BLAST of DC887601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
LTP1_MORNI6.939e-1767.27Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_TOBAC1.309e-1570.91Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_MALDO3.808e-1564.81Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_HELAN3.808e-1565.45Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU8.483e-1562.96Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP1_PRUDO1.890e-1462.96Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_DAUCA2.468e-1461.11Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_PRUPE3.223e-1462.96Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR3.223e-1462.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP2_SORBI4.210e-1468.52Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887601 EIC Citrus sinensis cDNA clone EIC0615 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887601 ID=DC887601; Name=DC887601; organism=Citrus sinensis; type=EST; length=341bp
CGCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACA
TGAGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAAC
ATAGATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAG
TCACAGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGG
GGCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCG
GCAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCA
GTTGCATGCAGCTTGGCGGTCANGGGTGGTTCTGGCGGCGC
back to top