DC887600

Overview
NameDC887600
Unique NameDC887600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length239
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.529e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = -1
Query:    3 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 239
            ALKVLRLQKGHKYCLL +LSSEVGWNYYDTIKELEKKR ER+QV Y R+KQL KLRVKAE+ A+E+LG QL+I+AP+KY
Sbjct:  127 ALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205          
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.527e-30
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = -1
Query:    3 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 239
            ALKVLRLQ GHKYCLL RLSSEVGWN+YDTIKELE KR ERA V Y R+KQL KLRVKAEK AEE+LG QL+I+AP+KY
Sbjct:  128 ALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206          
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.527e-30
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = -1
Query:    3 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 239
            ALKVLRLQ GHKYCLL RLSSEVGWN+YDTIKELE KR ER+QV Y R+KQL KLR KAEK AEERLG QL+++AP+KY
Sbjct:  128 ALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206          
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.527e-30
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = -1
Query:    3 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 239
            ALKVLRLQ GHKYCLL RLSSEVGWN+YDTIKELE KR ERAQ  Y R+KQL+KLR KAEK AEE+LG QL+++AP+KY
Sbjct:  128 ALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206          
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.322e-28
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = -1
Query:    3 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 239
            ALKVLRLQ GHKYCLL RLSSEVGWN+YDTIKELE KR ER+Q  Y R+KQL KLR KAEK AEE+LG QL+++A IKY
Sbjct:  128 ALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206          
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = -1
Query:    3 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 239
            ALKVLRLQ GHKYCLL RLS EVGW+++DTI ELE+KR  +AQV+Y RRKQLAKLR KA + AE++L P++E++A +KY
Sbjct:  128 ALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206          
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.788e-12
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = -1
Query:   18 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEII 239
            ALKV+RL+   K+  L RL+ EVGW Y      LE+KR E+A++ Y ++KQL +LR +AEK  E+++G   E++
Sbjct:  123 ALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 196          
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.512e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = -1
Query:   18 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEII 239
            ALKV+RL+   K+  L RL+ EVGW Y      LE+KR E+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:  123 ALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 196          
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = -1
Query:   18 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEII 239
            ALKV+RL+   K+  L RL+ EVGW Y      LE+KR E+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:  123 ALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196          
BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.400e-11
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = -1
Query:   18 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEII 239
            ALKV+RL+   K+  L RL+ EVGW Y      LE+KR E+A++ Y ++KQL +LR +AEK  E+++    +++
Sbjct:  123 ALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 196          
The following BLAST results are available for this feature:
BLAST of DC887600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL13A_LUPLU6.529e-3179.7560S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
R13A4_ARATH5.527e-3079.7560S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A3_ARATH5.527e-3078.4860S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A1_ARATH5.527e-3077.2260S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A2_ARATH2.322e-2875.9560S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_PICMA9.132e-2567.0960S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_BOVIN6.788e-1244.5960S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_PONAB1.512e-1143.2460S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_HUMAN1.975e-1143.2460S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL13A_MACFA4.400e-1141.8960S ribosomal protein L13a OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionDC887600 EIC Citrus sinensis cDNA clone EIC0614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887600 ID=DC887600; Name=DC887600; organism=Citrus sinensis; type=EST; length=239bp
CAATACTTGATGGGAGCAATGATTTCTAGCTGGGGACCAAGCCTCTCCTC
GGCAGCCTTCTCAGCTTTGACCCTCAATTTAGCCAACTGCTTCCTCCTCN
CATAAGCTACCTGGGCCCTCTCCNTTCTCTTCTTCTCAAGCTCCTTAATG
GTGTCATAATAGTTCCATCCTACTTCAGATGAAAGCCTGNCCAACAAGCA
GTACTTGTGTCCTTTTTGAAGCCTCAAGACCTTGAGAGC
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