DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3538 contig Csv1_Contig3538:399..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 5.237e-82
Identity = 149/200 (74.50%), Postives = 176/200 (88.00%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRT-TGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKHAVDRIGELLRQGKL NIVGIPTSKKT EQA+SLGIPLSDLD++PV+DL+IDGADEVDPF+NLVKGRGGSLLREKM+ GA KKFVVIVD+SK+V H+GGS LA+PVE+VP+CWKFTA++L+ L E  GC A LR     + FVTDNGNY++D+++++D+GDL   SD ILRL GVVEHGMFLDMA+TVI+A ELGV
Sbjct:   60 STAKHAVDRIGELLRQGKLENIVGIPTSKKTQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGV 259          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAD (Ribose-5-phosphate isomerase A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpiA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.721e-38
Identity = 94/200 (47.00%), Postives = 126/200 (63.00%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA +A   IGE L  G+L  IVG+P ++ T   A  LGIPL+ LD    VD+ IDGADEVDP+M L+KG GG+LLREKMV  A ++  +IVDESKL P L G+  A+P+EVV + ++ TA+ L       G   +LR   D QPF TD G+ ++D +    I D  V +D +   AG+VEHG+F+ +AT + VA   GV
Sbjct:   31 STAAYATRMIGERLANGELREIVGVPCAEGTAALARELGIPLTTLDDVERVDITIDGADEVDPYMALIKGGGGALLREKMVAQASRRVAIIVDESKLSPAL-GTRFALPIEVVDFGYRATARWLAAQ----GGSVRLRLRSDGQPFRTDQGHLILD-WACGPIADPTVLADRLAARAGIVEHGLFIGLATDLFVAGATGV 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_CHLSY (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.641e-38
Identity = 93/200 (46.50%), Postives = 126/200 (63.00%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA +A   I E L QG L +IVG+P ++ T + A  LGIPL+ LD    VDL IDGADEVDP ++L+KG GG+LLREKMV  A ++  +IVD+SKL P L G+  A+P+EVV + W+ TA+ L    E  G   +LR   D QPF TD GN ++D +    + D    +  +   AG+VEHG+F+ +AT + VA   GV
Sbjct:   33 STAAYATRMIAERLHQGDLNDIVGVPCAEGTAQLARELGIPLTTLDEVAAVDLTIDGADEVDPQLSLIKGGGGALLREKMVAQASRRVAIIVDDSKLSPAL-GTRFALPLEVVDFGWRATARWL----EAQGGTVQLRLRADGQPFRTDQGNLILD-WKCGPLNDPAALAAQLSARAGIVEHGLFIGLATDLFVAGPDGV 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_CHLAA (Ribose-5-phosphate isomerase A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.641e-38
Identity = 93/200 (46.50%), Postives = 126/200 (63.00%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA +A   I E L QG L +IVG+P ++ T + A  LGIPL+ LD    VDL IDGADEVDP ++L+KG GG+LLREKMV  A ++  +IVD+SKL P L G+  A+P+EVV + W+ TA+ L    E  G   +LR   D QPF TD GN ++D +    + D    +  +   AG+VEHG+F+ +AT + VA   GV
Sbjct:   33 STAAYATRMIAERLHQGDLNDIVGVPCAEGTAQLARELGIPLTTLDEVAAVDLTIDGADEVDPQLSLIKGGGGALLREKMVAQASRRVAIIVDDSKLSPAL-GTRFALPLEVVDFGWRATARWL----EAQGGTVQLRLRADGQPFRTDQGNLILD-WKCGPLNDPAALAAQLSARAGIVEHGLFIGLATDLFVAGPDGV 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BACCR (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpiA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 77/199 (38.69%), Postives = 118/199 (59.30%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST    + ++GE +++G   +   +PTSK+T   A  L IPL  L+    +DL IDGADE+D  + L+KG GG+LLREK+V  + KK ++I DESKLV HLG     +P+E++P+ WK T  ++Q L    GC   LR   ++ ++TDN N +ID      I +       +  + GVVE G+F+ M +T I+ ++ G+
Sbjct:   27 STVYWTIQKLGERVKEG--LSFQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKKLIIIADESKLVTHLG--TFPLPIEIIPFSWKQTENKIQSL----GCQTTLRLKNNETYITDNNNMIIDCIFPNHISNPVHLHTQLKMITGVVETGLFISMTSTAIIGTKNGI 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRA3 (Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype III GN=rpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.264e-35
Identity = 90/199 (45.23%), Postives = 122/199 (61.31%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   V+ IG  +++  L  +VG+ TS +T EQA  LGIPL   D   V+D+ +DGADEVDP  N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV    ++ ++RL  +F+  G     R T    F+TD GNY+IDL LKK I D K  ++ +    GVVEHG+F  M   VIVA + G+
Sbjct:   28 STAYFFVEEIGRRVKEEGL-QVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLG--AFKLPVEVV----RYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKK-IEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGL 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_THET2 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 91/199 (45.73%), Postives = 123/199 (61.81%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA++AV  +   LR+G+L  +VG+PTS+ T E A   GIPL DL    V DLAIDGADE+ P + L+KG GG+LLREK+V  A K+F+VI D +K VP LG     +PVE+VP+ ++ T K + DL    G   +LR  GD+ + TD G+ + D      IGD       +L + GVVE G+F+ MAT  +VA   GV
Sbjct:   32 STARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPPEGV-DLAIDGADEIAPGLALIKGMGGALLREKIVERAAKEFIVIADHTKKVPVLGRG--PVPVEIVPFGYRATLKAIADL----GGEPELRMDGDEFYFTDGGHLIADCRF-GPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGV 222          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRA5 (Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype V GN=rpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 90/199 (45.23%), Postives = 122/199 (61.31%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   V+ IG  +++  L  +VG+ TS +T EQA  LGIPL   D   V+D+ +DGADEVDP  N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV    ++ ++RL  +F+  G     R T    F+TD GNY+IDL LKK I D K  ++ +    GVVEHG+F  M   VIVA + G+
Sbjct:   28 STAYFFVEEIGRRVKEEGL-QVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLG--AFKLPVEVV----RYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKK-IEDPKQLANELDHTVGVVEHGLFNGMVNKVIVAGKNGL 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LACRJ (Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain JCM 1112) GN=rpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 84/198 (42.42%), Postives = 121/198 (61.11%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST K+ VD +G+ +++GK+ +I+G+ TS +T +QA  LGI + D+D    +DL IDGADE+      +KG GG+LL EK+V  A  K + IVDESKLV  LG     +PVEV+P    F ++ + D  E  G     R  GD+ F TD  NY+IDL+L  +I D K  +D ++ + G+VE G+FL+    VIV +  G
Sbjct:   30 STVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDDVDHIDLTIDGADEISDDFQGIKGGGGALLWEKIVANASNKVMWIVDESKLVHKLG--AFPLPVEVIP----FGSQHVFDRLEKKGYKPTWRMDGDKKFRTDENNYIIDLHL-GEIDDPKALADELIHMVGIVETGLFLNRVNDVIVGTPEG 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LACRD (Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain DSM 20016) GN=rpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 84/198 (42.42%), Postives = 121/198 (61.11%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST K+ VD +G+ +++GK+ +I+G+ TS +T +QA  LGI + D+D    +DL IDGADE+      +KG GG+LL EK+V  A  K + IVDESKLV  LG     +PVEV+P    F ++ + D  E  G     R  GD+ F TD  NY+IDL+L  +I D K  +D ++ + G+VE G+FL+    VIV +  G
Sbjct:   30 STVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDDVDHIDLTIDGADEISDDFQGIKGGGGALLWEKIVANASNKVMWIVDESKLVHKLG--AFPLPVEVIP----FGSQHVFDRLEKKGYKPTWRMDGDKKFRTDENNYIIDLHL-GEIDDPKALADELIHMVGIVETGLFLNRVNDVIVGTPEG 220          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_ARATH5.237e-8274.50Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
RPIA_CHLAD2.721e-3847.00Ribose-5-phosphate isomerase A OS=Chloroflexus agg... [more]
RPIA_CHLSY4.641e-3846.50Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]
RPIA_CHLAA4.641e-3846.50Ribose-5-phosphate isomerase A OS=Chloroflexus aur... [more]
RPIA_BACCR7.410e-3638.69Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_STRA31.264e-3545.23Ribose-5-phosphate isomerase A OS=Streptococcus ag... [more]
RPIA_THET21.651e-3545.73Ribose-5-phosphate isomerase A OS=Thermus thermoph... [more]
RPIA_STRA51.651e-3545.23Ribose-5-phosphate isomerase A OS=Streptococcus ag... [more]
RPIA_LACRJ1.651e-3542.42Ribose-5-phosphate isomerase A OS=Lactobacillus re... [more]
RPIA_LACRD1.651e-3542.42Ribose-5-phosphate isomerase A OS=Lactobacillus re... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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