DC887584

Overview
NameDC887584
Unique NameDC887584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:10..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 6.937e-76
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGKTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK AAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 5.872e-75
Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGKT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK AAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 4.208e-73
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK AAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 1.955e-70
Identity = 133/142 (93.66%), Postives = 134/142 (94.37%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK AAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.948e-63
Identity = 115/143 (80.42%), Postives = 126/143 (88.11%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK  AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.500e-62
Identity = 115/143 (80.42%), Postives = 125/143 (87.41%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGK RG+   RK +SHRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK  AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.446e-62
Identity = 113/143 (79.02%), Postives = 125/143 (87.41%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGK RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK  AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.446e-62
Identity = 113/143 (79.02%), Postives = 125/143 (87.41%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGK RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK  AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.829e-61
Identity = 114/143 (79.72%), Postives = 124/143 (86.71%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGK RG+   RK  +HRR QRWADK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK  AFVP DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.826e-61
Identity = 111/143 (77.62%), Postives = 125/143 (87.41%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGK +G+ A RKLK+HR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK  AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:    1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of DC887584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_FRAAN6.937e-7697.8940S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES5.872e-7597.1840S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH4.208e-7395.7740S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH1.955e-7093.6640S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU3.948e-6380.4240S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA1.500e-6280.4240S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR7.446e-6279.0240S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA7.446e-6279.0240S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_DROME2.829e-6179.7240S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_BRUMA4.826e-6177.6240S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]

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Properties
Property NameValue
Genbank descriptionDC887584 EIC Citrus sinensis cDNA clone EIC0591 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887584 ID=DC887584; Name=DC887584; organism=Citrus sinensis; type=EST; length=673bp
AGNGATACTNATTTACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAAG
TTCTCTCAACAGCAATACATGATAAAGGAAAAAAGTAATCAACAGGGATT
AATGAAAATAAAGTGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATC
AGGAGTTTAGGATCTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAGAA
GAGACACGCCTGAAACCTTGACAACCTTAAATCTAACACCAGGAATATCT
CCCACAGCATGCCCCTTTCGACCAAATCCTGCAATAAGTACCTCGTCATT
TTCTTCAATGTAGTTCAAACAACCATCGTTTGGTACGAAAGCTGCAGTCT
TCTTTCCATTCTTGATCAGCTGAACTCGAGCGCATTTTCTGATAGCAGAG
TTGGGCTGCTTTGCCTCGATACCGATTTTCTCAAGAACAATGCCTTTTGC
ATGGGAAGAGCCAGCAAATGGCTTCTTCCATTCATTGCCAAGGTGGGATT
TCTTGTATGACTTATCAGCCCACCTTTGTCTTCTGCGGTGGCTCTTCAGC
TTGCGACCAGCTCCCATTCCACGTGTCTTCCCCATGTTGGTGTTACGAAG
AGGATTTTTTACTGTAACGAACGACTTTGGAGCTTGAGAGTTGCAAGANG
ACGCCGCGAGTCCCCGGCCGTAA
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