DC887582

Overview
NameDC887582
Unique NameDC887582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887582_ssr413 microsatellite DC887582_ssr413:413..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.251e-54
Identity = 109/140 (77.86%), Postives = 112/140 (80.00%), Query Frame = -2
Query:  210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629
            TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                         KSNHV RKLEKR++ RTLDPHIEEQFG+GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR
Sbjct:   74 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 213          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.245e-53
Identity = 109/140 (77.86%), Postives = 111/140 (79.29%), Query Frame = -2
Query:  210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629
            TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                          SNHVVRKLEKRQ+ RTLD HIEEQFG+GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR
Sbjct:   74 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEGQDAEATTEEAKK-SNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 212          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.786e-50
Identity = 103/140 (73.57%), Postives = 108/140 (77.14%), Query Frame = -2
Query:  210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629
            TRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR                          SNHV  KLEKRQ+ RTLD HIEEQFG G+LLACISSRPGQCG+ADG ILEGKELEFYMKKLQR
Sbjct:   74 TRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTPEEGEATTEEAKK--SNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQR 211          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.148e-48
Identity = 101/140 (72.14%), Postives = 106/140 (75.71%), Query Frame = -2
Query:  210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629
            TRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR                          SNHV RKLE RQ+ R LD H+EEQF +GRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQ+
Sbjct:   74 TRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEVKK------------SNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQK 201          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.041e-47
Identity = 95/142 (66.90%), Postives = 108/142 (76.06%), Query Frame = -2
Query:  210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXK--SNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629
            TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR                            SNH++RK+  RQ+ R+LD HIE+QF +GRLLACISSRPGQCGRADGYILEGKELEFYMKK+Q+
Sbjct:   74 TRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQK 215          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.274e-37
Identity = 75/139 (53.96%), Postives = 97/139 (69.78%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR                          S  V +K +KR+K+  + P ++EQF  G+LLACISSRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   73 TRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGRKKGAKLTPEEEDILNKKR--------SKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_APIME (40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.056e-35
Identity = 76/139 (54.68%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA PF+QWY  HY + +GR                          S     K + RQ+   ++P +EEQF  GR+LACISSRPGQCGR DGYILEGKELEFYM++++
Sbjct:   73 TRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKR--------SKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIK 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_DANRE (40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 6.809e-35
Identity = 74/139 (53.24%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+DVVYNASNNELVRT+TLVK+ +V VD+ P++QWY  HY + +GR                          S  V +K   R+K   + P +EEQF  G+LLACISSRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   73 TRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR--------SKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+DVVYNASNNELVRT+TLVK+ I+ VD+ PF+QW+  HY + +GR                          S    +K E+R+K   + P +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   73 TRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLGRKKGAKLTPEEEEILNKKR--------SKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          S  + +K ++R+K+  +   +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR--------SKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
The following BLAST results are available for this feature:
BLAST of DC887582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE2.251e-5477.8640S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ4.245e-5377.8640S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_PRUAR9.786e-5073.5740S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH3.148e-4872.1440S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH2.041e-4766.9040S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_ICTPU7.274e-3753.9640S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_APIME3.056e-3554.6840S ribosomal protein S8 OS=Apis mellifera GN=RpS8... [more]
RS8_DANRE6.809e-3553.2440S ribosomal protein S8 OS=Danio rerio GN=rps8 PE... [more]
RS8_XENLA8.892e-3552.5240S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8_RAT1.517e-3451.0840S ribosomal protein S8 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionDC887582 EIC Citrus sinensis cDNA clone EIC0589 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887582 ID=DC887582; Name=DC887582; organism=Citrus sinensis; type=EST; length=630bp
ATTGCCGGTTATCATATAGAAAACATAACAATGGTAAAGAATGTTCTCAT
TAAAAAAAAAAAAAAAATCCTAAACATATCACCCTCATGCTCTTTAATTG
TAGCCCGTCAAGGTCCCATACATAAAACAAACAAAATCAACTAAAGATCA
AAACAGACGCATGGGCAATAATGATTCTAAGCAGCGGCTCCTGCACCCTT
GCCCTTCTTTCTCTGGAGCTTCTTCATGTAAAATTCCAGCTCCTTACCTT
CTAGTATGTACCCATCAGCTCTGCCACATTGACCTGGCCGTGAAGAAATG
CAGGCCAACAACCTACCAGCACCAAATTGCTCTTCAATGTGAGGATCGAG
TGTGCGGTCCTTCTGGCGCTTTTCAAGCTTCCTAACAACATGATTGCTCT
TCTTAGTTTCTTCTGCTGCTGCTGCTGCACCTTCTCCCTCCTCTGTGGTT
TCCTTCTTGGTAACTGCCTTCTTCTTCCTACCAATGTCAACGCCATAGTG
CTGAAGGTACCATTGCTTAAAAGGCGCTGCATCCACTTGCACAATGGCAC
TCTTCACCAGAGTTTGAGTCCTGACGAGCTCATTATTAGAGGCATTGTAA
ACAACATCCAGGATACGGGTCTTGCGGGTG
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