DC887582
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2) HSP 1 Score: 211.846 bits (538), Expect = 2.251e-54 Identity = 109/140 (77.86%), Postives = 112/140 (80.00%), Query Frame = -2 Query: 210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR KSNHV RKLEKR++ RTLDPHIEEQFG+GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR Sbjct: 74 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 213
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 4.245e-53 Identity = 109/140 (77.86%), Postives = 111/140 (79.29%), Query Frame = -2 Query: 210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR SNHVVRKLEKRQ+ RTLD HIEEQFG+GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR Sbjct: 74 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEGQDAEATTEEAKK-SNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 212
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 9.786e-50 Identity = 103/140 (73.57%), Postives = 108/140 (77.14%), Query Frame = -2 Query: 210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629 TRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR SNHV KLEKRQ+ RTLD HIEEQFG G+LLACISSRPGQCG+ADG ILEGKELEFYMKKLQR Sbjct: 74 TRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTPEEGEATTEEAKK--SNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQR 211
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 3.148e-48 Identity = 101/140 (72.14%), Postives = 106/140 (75.71%), Query Frame = -2 Query: 210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629 TRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR SNHV RKLE RQ+ R LD H+EEQF +GRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQ+ Sbjct: 74 TRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEVKK------------SNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQK 201
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.041e-47 Identity = 95/142 (66.90%), Postives = 108/142 (76.06%), Query Frame = -2 Query: 210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXK--SNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629 TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR SNH++RK+ RQ+ R+LD HIE+QF +GRLLACISSRPGQCGRADGYILEGKELEFYMKK+Q+ Sbjct: 74 TRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQK 215
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 7.274e-37 Identity = 75/139 (53.96%), Postives = 97/139 (69.78%), Query Frame = -2 Query: 213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629 TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY HY + +GR S V +K +KR+K+ + P ++EQF G+LLACISSRPGQCGRADGY+LEGKELEFY++K++ Sbjct: 73 TRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGRKKGAKLTPEEEDILNKKR--------SKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_APIME (40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 3.056e-35 Identity = 76/139 (54.68%), Postives = 93/139 (66.91%), Query Frame = -2 Query: 213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629 TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA PF+QWY HY + +GR S K + RQ+ ++P +EEQF GR+LACISSRPGQCGR DGYILEGKELEFYM++++ Sbjct: 73 TRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKR--------SKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIK 203
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_DANRE (40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 6.809e-35 Identity = 74/139 (53.24%), Postives = 93/139 (66.91%), Query Frame = -2 Query: 213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629 TRKTRI+DVVYNASNNELVRT+TLVK+ +V VD+ P++QWY HY + +GR S V +K R+K + P +EEQF G+LLACISSRPGQCGRADGY+LEGKELEFY++K++ Sbjct: 73 TRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR--------SKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3) HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35 Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = -2 Query: 213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629 TRKTRI+DVVYNASNNELVRT+TLVK+ I+ VD+ PF+QW+ HY + +GR S +K E+R+K + P +EEQF G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++ Sbjct: 73 TRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLGRKKGAKLTPEEEEILNKKR--------SKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34 Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = -2 Query: 213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629 TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY HY + +GR S + +K ++R+K+ + +EEQF G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++ Sbjct: 73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR--------SKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203 The following BLAST results are available for this feature:
BLAST of DC887582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887582 ID=DC887582; Name=DC887582; organism=Citrus sinensis; type=EST; length=630bpback to top |