DC887573

Overview
NameDC887573
Unique NameDC887573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887573_ssr316 microsatellite DC887573_ssr316:316..325. BLAST: Citrus ESTs to Prunus persica proteins V1
DC887573_ssr511 microsatellite DC887573_ssr511:511..522. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1568 contig Csv1_Contig1568:10..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 3.952e-81
Identity = 147/170 (86.47%), Postives = 164/170 (96.47%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGIDLIAGGKSKK+KRTAPKS+D+YLKLLVKLYRFLVRR++SNF+ VILKRLFMSKVNK P+SLSRL +FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KG
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKG 170          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 3.952e-81
Identity = 147/170 (86.47%), Postives = 163/170 (95.88%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGIDLIAGGKSKK+KRTAPKS+D+YLKL VKLYRFLVRRT+S F+ VILKRLFMSKVNK P+SLSRL +FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KG
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKG 170          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.651e-77
Identity = 144/167 (86.23%), Postives = 157/167 (94.01%), Query Frame = -2
Query:    2 DLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 502
            DL AGGK+KK+KRT+PKSNDIYLKLLVKLYRFLVRRTDSNF+ VILKRLFMSKVN+PP+SLSRL K+M+GKE KI VVVG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG
Sbjct:    1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 166          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 4.379e-72
Identity = 135/171 (78.95%), Postives = 151/171 (88.30%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGIDLIAGGKSKK+KRT PKS+D+YLKLLVK  R+LVRRT+S F+ VILKRLFMSKVNK P+SLSRL ++M GK+ KIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G
Sbjct:    1 MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.252e-59
Identity = 113/172 (65.70%), Postives = 144/172 (83.72%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +K  R  PKS ++YL LLVK+YRFL RR+ + F++++LKRLFMS++NKP +SL+R+T+FMK  G+E+ IAVVVGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKG
Sbjct:    1 MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.237e-58
Identity = 114/172 (66.28%), Postives = 139/172 (80.81%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +K +RT PKS D+YL+LLVKLYR+L RRT + F+K+ILKRLFMSK+ +PP+SLS++ +FMK  G+E   AV+VGTVTDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKG
Sbjct:    1 MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 1.237e-58
Identity = 113/172 (65.70%), Postives = 136/172 (79.07%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+D I   K +K  RT PKS DIYL+LLVKLYRFL RR+D+ F+KV+LKRLFMSK N+PP++LSRL + MK  G+E+KIAVVVGT+TDD+R+  +P LKV ALR T  AR RI KAGG+ +TFDQLA+  P GQ TVLL GP+ ARE  +HFG APG PHSHTKPY+RSKG
Sbjct:    1 MGVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 3.599e-58
Identity = 113/172 (65.70%), Postives = 137/172 (79.65%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E+K AVVVGTVTDD+R+ EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKG
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 4.701e-58
Identity = 112/172 (65.12%), Postives = 137/172 (79.65%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E+K AVVVGT+TDD+R+ EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKG
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.368e-57
Identity = 113/172 (65.70%), Postives = 136/172 (79.07%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E+K AVVVGT+TDD+RV EVP LKV ALR T  AR+RI +AGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKG
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171          
The following BLAST results are available for this feature:
BLAST of DC887573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL183_ARATH3.952e-8186.4760S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL182_ARATH3.952e-8186.4760S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL18_CICAR2.651e-7786.2360S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH4.379e-7278.95Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_IXOSC7.252e-5965.7060S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18_TIMBA1.237e-5866.2860S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_ICTPU1.237e-5865.7060S ribosomal protein L18 OS=Ictalurus punctatus G... [more]
RL18_MOUSE3.599e-5865.7060S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]
RL18_RAT4.701e-5865.1260S ribosomal protein L18 OS=Rattus norvegicus GN=... [more]
RL18_MACFA1.368e-5765.7060S ribosomal protein L18 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionDC887573 EIC Citrus sinensis cDNA clone EIC0577 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887573 ID=DC887573; Name=DC887573; organism=Citrus sinensis; type=EST; length=569bp
TTCCCTTAGATCGCACATAGGGTTTGGTGTGGCTGTGTGGTACACCAGGA
GCAGGTCCAAAGTGCTTGACAGCCTCACGAGCATTCTTCGGACCTCTCAG
GAGAACCGTGTTCTGACCCAAAGGAGCACGAAGAGCCAGTTGGTCAAATG
TCAAGCATTCTCCCCCTGCCTTCTCAATTCTCGCCCTTGCTGTCTCTGTG
AACCTCAGTGCAGTAACCTTGAGTGCAGGAACTTCATACACACGAATATC
ATCAGTGACTGTTCCAACAACCACAGCAATCTTGTCCTCCTTGCCCTTCA
TGAATTTAGTCAAACGAGAGAGAGACATAGGAGGCTTGTTGACTTTGCTC
ATGAAGAGCCTCTTCAATATCACCTTATCGAAATTGCTATCAGTCCTCCT
CACGAGAAATCGGTACAGCTTGACGAGAAGCTTGAGATAGATATCGTTCG
ATTTCGGGGCAGTCCTCTTGGACTTCTTGCTCTTACCACCGGCTATCAAA
TCGATACCCATTGTTGTTGTTGCTGCTGCTGCTCCCTGCGACTGCTTCCC
TAAACAGCAAATGCTATTC
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