DC887559

Overview
NameDC887559
Unique NameDC887559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887559_ssr112 microsatellite DC887559_ssr112:112..131. BLAST: Citrus ESTs to Prunus persica proteins V1
DC887559_ssr79 microsatellite DC887559_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12263 contig Csv1_Contig12263:53..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887559 vs. ExPASy Swiss-Prot
Match: NSP5_ARATH (Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.444e-28
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  223 FPTVGIGKQIIVYGGEVDPSDLGHLGAGKFAGELYSLGTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 507
            FP V  GK I++YGGE +P +L H+GAGK +GE+Y L TETLVW R   G   +  P  RGWCAF   ++ G+ GLLV+GGNSP+N+RLDD+ F+
Sbjct:  225 FPAVSYGKYIVIYGGEEEPHELMHMGAGKMSGEVYQLDTETLVWERIVCG-NEEEKPSQRGWCAFTKAVKDGEEGLLVHGGNSPTNERLDDLVFW 318          

HSP 2 Score: 30.4166 bits (67), Expect = 2.444e-28
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = -1
Query:  506 AHAQWAQVETSGEKPTARSVF 568
            A  QW  VET+G+ P ARSVF
Sbjct:  205 ASEQWKAVETTGDVPAARSVF 225          
BLAST of DC887559 vs. ExPASy Swiss-Prot
Match: NSP4_ARATH (Nitrile-specifier protein 4 OS=Arabidopsis thaliana GN=NSP4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.771e-21
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = -2
Query:  223 FPTVGIGKQIIVYGGEVDPSDLGHLGAGKFAGELYSLGTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 507
            F +  +GK I+++GGE+    L H+G G+     ++L TETL W R D   G +  P  RGW A      GGK GL+++GG +P+NDR DD++F+
Sbjct:  520 FASAALGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGGEEETPSSRGWTASTTATIGGKKGLVMHGGKAPTNDRFDDLFFY 614          

HSP 2 Score: 30.4166 bits (67), Expect = 1.771e-21
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = -1
Query:  503 PAHAQWAQVETSGEKPTARSVFS 571
            P   +W QVET G +P+ RSVF+
Sbjct:  499 PVQDKWTQVETFGVRPSERSVFA 521          
BLAST of DC887559 vs. ExPASy Swiss-Prot
Match: ESP_ARATH (Epithiospecifier protein OS=Arabidopsis thaliana GN=ESP PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.944e-21
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  223 IGKQIIVYGGEVDPSDLGHLGAGKFAGELYSLGTETLVWTRWDDGPGSDHHPG-PRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 492
            +GK II++ GEV P   GH G G  + E Y+L TETLVW +     G +  P  PRGW A+      GK+GLL++GG  P+N+R DD+YF+
Sbjct:  250 VGKYIIIFAGEVWPDLNGHYGPGTLSNEGYALDTETLVWEKL----GEEGAPAIPRGWTAYTAATVDGKNGLLMHGGKLPTNERTDDLYFY 336          

HSP 2 Score: 36.1946 bits (82), Expect = 3.944e-21
Identity = 14/24 (58.33%), Postives = 20/24 (83.33%), Query Frame = -1
Query:  500 PAHAQWAQVETSGEKPTARSVFSY 571
            PA  +W +VET+G KP+ARSVF++
Sbjct:  224 PASKKWTEVETTGAKPSARSVFAH 247          
BLAST of DC887559 vs. ExPASy Swiss-Prot
Match: NSP1_ARATH (Nitrile-specifier protein 1 OS=Arabidopsis thaliana GN=NSP1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.629e-21
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  223 FPTVGIGKQIIVYGGEVDPSDLGHLGAGKFAGELYSLGTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 507
            F +  IGK I+++GGE+    L H+G G+     ++L TETL W R D   G +  P  RGW A       GK GL+++GG +P+NDR DD++F+
Sbjct:  371 FASAAIGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGGEEETPSSRGWTASTTATIDGKKGLVMHGGKAPTNDRFDDLFFY 465          

HSP 2 Score: 30.4166 bits (67), Expect = 6.629e-21
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = -1
Query:  503 PAHAQWAQVETSGEKPTARSVFS 571
            P   +W QVET G +P+ RSVF+
Sbjct:  350 PVQDKWTQVETFGVRPSERSVFA 372          
BLAST of DC887559 vs. ExPASy Swiss-Prot
Match: NSP3_ARATH (Nitrile-specifier protein 3 OS=Arabidopsis thaliana GN=NSP3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.176e-20
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  223 FPTVGIGKQIIVYGGEVDPSDLGHLGAGKFAGELYSLGTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 507
            F +  IGK I+++GGE+      H+G G+     ++L TETL W R D   G+   P  RGW A   G   GK GL+++GG +P+NDR DD++F+
Sbjct:  371 FASAAIGKHIVIFGGEIAMDPRAHVGPGQLIDGTFALDTETLQWERLDKFEGT---PSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 462          

HSP 2 Score: 32.7278 bits (73), Expect = 4.176e-20
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = -1
Query:  503 PAHAQWAQVETSGEKPTARSVFS 571
            PA  +W QVET G KP  RSVF+
Sbjct:  350 PAEDKWTQVETFGVKPNERSVFA 372          
BLAST of DC887559 vs. ExPASy Swiss-Prot
Match: NSP2_ARATH (Nitrile-specifier protein 2 OS=Arabidopsis thaliana GN=NSP2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.195e-19
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = -2
Query:  223 FPTVGIGKQIIVYGGEVDPSDLGHLGAGKFAGELYSLGTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 507
            F +  +GK I+V+GGE+      H G G+ +G  ++L TETL W + D     +  P  RGW A   G   GK GL+++GG + +NDR  D++F+
Sbjct:  372 FASAVVGKHILVFGGEIAMDPKAHEGPGQLSGGTFALDTETLKWEKLDKLGEEEETPSIRGWSASTTGTIDGKKGLVMFGGKAQTNDRFGDLFFY 466          

HSP 2 Score: 36.965 bits (84), Expect = 1.195e-19
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = -1
Query:  503 PAHAQWAQVETSGEKPTARSVFS 571
            PA  +W QVET GEKP ARSVF+
Sbjct:  351 PAQDKWTQVETFGEKPCARSVFA 373          
The following BLAST results are available for this feature:
BLAST of DC887559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NSP5_ARATH2.444e-2854.74Nitrile-specifier protein 5 OS=Arabidopsis thalian... [more]
NSP4_ARATH1.771e-2141.05Nitrile-specifier protein 4 OS=Arabidopsis thalian... [more]
ESP_ARATH3.944e-2146.15Epithiospecifier protein OS=Arabidopsis thaliana G... [more]
NSP1_ARATH6.629e-2141.05Nitrile-specifier protein 1 OS=Arabidopsis thalian... [more]
NSP3_ARATH4.176e-2041.05Nitrile-specifier protein 3 OS=Arabidopsis thalian... [more]
NSP2_ARATH1.195e-1937.89Nitrile-specifier protein 2 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionDC887559 EIC Citrus sinensis cDNA clone EIC0552 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887559 ID=DC887559; Name=DC887559; organism=Citrus sinensis; type=EST; length=571bp
TGTAACGGTTACATATATTACACACACCCATCATTATTGCATGTAACATT
ATAACTTCTCAGTTNTTATCTGCCTTAATATTTATTTATTCACCGCTCAA
GGACTTGCTCTACACACACACACACACACACTCTCCACGATTTCTCTCAT
ACGCATATTGCCATAATTACATCACCATCATTATCAAAATGATTAATCTT
CAATCCCATCCAAGCAAGGAGTAAAGAAGTAAATGTCATCAAGCCTATCA
TTACTTGGAGAATTACCACCGTATACCAGTAGTCCATGTTTTCCACCCCT
AAGCCCACCAGCAAATGCACACCATCCGCGAGGCCCGGGATGATGATCTG
AGCCGGGCCCATCATCCCACCGTGTCCACACCAATGTCTCAGTGCCCAAT
GAGTAAAGTTCACCGGCGAATTTTCCGGCCCCAAGGTGGCCCAAGTCACT
GGGGTCTACTTCTCCGCCGTAGACGATTATTTGTTTTCCGATCCCAACAG
TAGGAAAATACGCTCCGAGCTGTTGGTTTTTCGCCGCTCGTCTCTACTTG
GGCCCATTGTGCATGGGCTGG
back to top