DC887531

Overview
NameDC887531
Unique NameDC887531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.596e-24
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = -3 
Query:  333 RRSLHWL-PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 515
            R+  H L PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  316 RQGNHCLAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT_SCHDU (Actin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = -3 
Query:  333 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  325 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 378
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = -3 
Query:  333 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = -3 
Query:  333 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = -3 
Query:  333 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = -3 
Query:  333 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = -3 
Query:  333 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = -3 
Query:  333 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = -3 
Query:  333 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = -3 
Query:  333 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct:  324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of DC887531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
ACT1_SORBI1.596e-2490.32Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACT_SCHDU2.085e-2498.15Actin OS=Scherffelia dubia PE=2 SV=1[more]
ACT_GOSHI2.085e-2498.15Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT6_SOLTU2.085e-2498.15Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT4_ARATH2.085e-2498.15Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT3_SOLTU2.085e-2498.15Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT3_PEA2.085e-2498.15Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT1_TOBAC2.085e-2498.15Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT1_ORYSJ2.085e-2498.15Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI2.085e-2498.15Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionDC887531 EIC Citrus sinensis cDNA clone EIC0509 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887531 ID=DC887531; Name=DC887531; organism=Citrus sinensis; type=EST; length=520bp
TATTACTCATGAAAGGAATACAATTGTTTGGCACTAAATTATAATGAGCT
CTTGGAAGAAGAATTGGGAAAAGAATCTTTAATTCAACCCAAACCAAATC
AGTAACAATCCAATACTCTTCTACTAACAAATAATAATGTAAAGAATTGA
ATCCCCCCATATTCATTGTTCAGACATCAAAGGACGAAAACACGAAAAAG
AAACAAGAACGAAAAGGATGAGAAAAAAGGAGAAAAAAGAAACTTCGAAC
AACCGCTTGATTGGAAGAAGCCTTTCCTTAATACAAAATGTCTGGTATAT
GTTTCCTCATAGCATTTCTCTTTCCACGATTAGAAGCATTTTCTGTGGAC
AATTGATGGTCCAGACTCATCATATTCTGCCTTTGCGATCCACATCTGCT
GGAAGGTGCTGAGGGAAGCCAATATCGAGCCTCCTATCCAGACACTGTAC
TTCCTCTCTGGTGGTGCTACCACCTTGATCTTCNTGCTACTTGGGAGCCA
ATGCAGTGATCTCCTTGCTC
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