DC887530

Overview
NameDC887530
Unique NameDC887530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:354..1172. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of DC887530 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = -2 
Query:  390 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKXHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 767
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of DC887530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_VITVI3.835e-6499.21Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC3.835e-6499.21Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS3.835e-6499.21Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ3.835e-6499.21Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI3.835e-6499.21Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO3.835e-6499.21Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA3.835e-6499.21Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE3.835e-6499.21Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU3.835e-6499.21Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI3.835e-6499.21Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionDC887530 EIC Citrus sinensis cDNA clone EIC0506 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887530 ID=DC887530; Name=DC887530; organism=Citrus sinensis; type=EST; length=819bp
TTTTTATTATTCACAAAAACATTGAATCAATTTCATAAAAGAAAAATAAA
TAACAAACTAAACTTAGATTAGAAGCAAAATAATAGAGATGTTCAACACC
ACCACTATTGTGGCAACAGGTATCCAAAAGAACACATAAAAGCCAGTCTC
TTATGGCGAATTAAAATCCCCATCATCAACAAATAGACATTATAAAACAC
CACCAAAAACAAACCCAGATGATGACAAAAGCCATATTCTAATAACTACT
GGAATCCTACCCCTATCTACCCCCACCAACCCCCACGTACAAATTAACAC
ATTACAACTTCCCCCTTCCCTTCCAGTCATTCAATTGAAGCAAGCAGCAA
TTACGCTTAAGCACGCTCGCCACGGATCCTACGGGCAAGCTGTATGTCCT
TGGGCATAATAGTGACACGCTTTGCATGAATGGCGCAGAGGTTAGTGTCC
TCGAAGAGACCAACAAGGTAAGCCTCCGCTGCCTCCTGCAGGGCCAGTAC
TGCATGGCTCTGGAAACGCAGATCAGTCTTAAAGTCCTGAGCAATTTCAC
GAACAAGTCTCTGGAATGGGAGTTTCCTGATAAGCAGCTCGGTACTCTTC
TGGTACTTGCGAATTTCTCGAAGGGCGACGGTTCCAGGACGGTAACGATG
ANGCTTCTTAACACCACCGGTGGTGGGCGCAGACTTACGGGCGGCCTTGG
TAGCAAGTTGCTTCCTAGGAGCCTTTCCTCCGGTTGACTTACGTGCAGTT
TGCTTGGTACGGGCCATCTCTGAGTTTCTTCAACTCTTCCACTCAATTTC
TCTCTCTAAAATTTGCTTT
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