DC887522

Overview
NameDC887522
Unique NameDC887522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887522_ssr241 microsatellite DC887522_ssr241:241..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5607 contig Csv1_Contig5607:1..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887522 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.867e-28
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = -3 
Query:  324 SGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPPGTAXXXXXXXXXRQFVDSASTRPSPRGFGGGN 575
            SGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LEDALK+EQKAPPGTA         ++FV+SAS++P PRGFG GN
Sbjct:  481 SGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564
The following BLAST results are available for this feature:
BLAST of DC887522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SR54C_ARATH1.867e-2873.81Signal recognition particle 54 kDa protein, chloro... [more]
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Properties
Property NameValue
Genbank descriptionDC887522 EIC Citrus sinensis cDNA clone EIC0496 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887522 ID=DC887522; Name=DC887522; organism=Citrus sinensis; type=EST; length=592bp
TCAAAATGGCATAAGGGAATCATGAATCTAATGTGTTCATATTGCTCTTC
ATACAACGCATTTCATTCTAGCTTTCATTTTCAATCTCACAAGTCAATGC
AAGTGACATTGGTTAACATACATAAAATTACAGTACTTAAAAGACACAAG
GTGGCAATTCCGTGCTTGGTTACATTAATTGATGAATTCTTACAGCTCAA
ACAACCTTGAAAACTCTTAACTTCATGAGTAGAGATATCCGAGAGAGAGA
AAGAATTTATGATTCCTTTACTGTTTGCCTGGAGGCCAGTATGTTGTTTG
CAGCTGACAAAACTTAAGATCTAGTTGCCACCCCCAAAACCACGAGGACT
TGGCCTTGTTGATGCCGAGTCAACGAACTGCCTCCTTGATTCTGATCTTC
TCTTCCTCCTAGCGGTACCAGGAGGAGCCTTCTGTTCCGATTTAAGGGCA
TCCTCAAGATTGCTCAGTGCAGGAAGTGAACCACCTTCCATTACACCCAT
TAAGTTCTTCATACGCACACGCATTTGGAAGAGTTGAGCAACAAGTTGGC
TCACCTGCTGTTCTGTTTTCCCAGAACNTGAGCAACTCTTTT
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