DC887517

Overview
NameDC887517
Unique NameDC887517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.569e-25
Identity = 51/74 (68.92%), Postives = 66/74 (89.19%), Query Frame = -2
Query:  256 QVTKRVET-DESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAGVFGGPRDDE 474
            +VTKRV++ D+ EW+ WNWRTEGD+M NGAFFV SG G+S+ Y+KASSV+PK+A+L+D+LT NAGVFGGPRDD+
Sbjct:  346 EVTKRVDSKDDGEWSNWNWRTEGDLMENGAFFVASGEGMSSMYSKASSVDPKAASLVDQLTRNAGVFGGPRDDQ 419          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = -2
Query:  274 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAGVFG 474
            +VTKRVET + +W GWNWR+EGD++VNGAFFV SG G   +Y KA SVEPKSA+ I ++T ++GV G
Sbjct:  349 EVTKRVETPDGDWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVLG 415          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  274 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAGVFG 474
            +VTKRVETD SEW  WNWR+EGD+++NGAFF PSG G S  Y +ASS+  K ++++D +T  AG  G
Sbjct:  397 EVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALG 463          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.594e-15
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAG 474
            +VTKRV+T  S W GWNWR+EGD++ NGA+F  SG   S  YA+ASS+  KS++L+  +T +AG
Sbjct:  356 EVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAG 419          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.126e-14
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAG 474
            +VTKRV   + EW  WNWR++GD+M+NGA+F  SG G S  YA+ASS+  KS++L+  LT ++G
Sbjct:  345 EVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSLVGMLTSSSG 408          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.185e-14
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAG 474
            +VTK  +   S+W  WNWR+EGD+ +NGAFF PSG G S+ YAKASS+  + ++L+  +T NAG
Sbjct:  335 EVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASSLSARPSSLVASVTSNAG 398          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.055e-13
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAG 474
            +VTKR  T ES+W  WNWR+EGD+ +NGAFF  SG G    YA+ASS+  KS++L+  +T  +G
Sbjct:  343 EVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSGAGAGANYARASSLSAKSSSLVGTMTSYSG 406          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.378e-13
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAG 474
            +VTK  +  ESEW  WNWR+ GD+++NGAFF PSG   S+ YAKASS+  K ++L+  LT  +G
Sbjct:  335 EVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSG 398          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.350e-13
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = -2
Query:  265 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAGVF---GGPR 474
            +VTKR    + +W  WNWR+EGD+ +NGAFF  SG GL   YA+ASS+  KS++L+  +T NAG     GG R
Sbjct:  344 EVTKRDYAGQWQWRHWNWRSEGDLFLNGAFFTRSGSGLGASYARASSLAAKSSSLVGVITYNAGALNCRGGRR 416          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQ--YAKASSVEPKSAALIDRLTMNAG 474
            +VTK  +  ES+W  WNWR+EGD+M+NGA+F  +G G S+   YA+ASS+  + ++L+  +T NAG
Sbjct:  329 EVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAG 394          
The following BLAST results are available for this feature:
BLAST of DC887517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PEL13_ARATH1.569e-2568.92Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL12_ARATH2.195e-1961.19Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL15_ARATH7.060e-1856.72Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL1_ARATH5.594e-1553.13Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL14_ARATH2.126e-1451.56Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL5_ARATH6.185e-1451.56Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL8_ARATH1.055e-1351.56Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL18_ARATH1.378e-1351.56Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL20_ARATH2.350e-1349.32Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL18_SOLLC1.989e-1246.97Probable pectate lyase P18 OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionDC887517 EIC Citrus sinensis cDNA clone EIC0488 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887517 ID=DC887517; Name=DC887517; organism=Citrus sinensis; type=EST; length=478bp
TCCCCTATCTTGCTTTATAATTTTCTATAACAATAATAATTGTAATGATA
ATGGAGCATCATGGTTGGTGATAGTGTACAAAATCAAAATAATTAGAAGA
GACAAAAAGATTGAGGTTGAAGGAGAGGGTGGTGGGAGCCGCGACGCGCC
GCTCCCGAATACCATTCCAAAGAAGTCGCCATCACCGTTGTTGCGGTTGG
TGCCGCCGCTGCCGGACCCACCGCCGCTGAATCCGGGATAAGAGTTGCCC
TCCCCTTCATCATCCCTGGGCCCACCGAAGACGCCGGCGTTCATGGTCAG
CCGGTCGATGAGGGCGGCTGATTTGGGCTCAACACTCGAGGCCTTTGCGT
ACTGCGTGCTGAGCCCCACGCCTGACGGCACAAAGAATGCCCCATTTACC
ATTACGTCCCCCTCCGTCCTCCAATTCCAGCCCGCCCACTCACTCTCGTC
TGTCTCCACGCGCTTCGTCACCTGAATT
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