DC887512

Overview
NameDC887512
Unique NameDC887512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1569 contig Csv1_Contig1569:70..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.422e-70
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGKT GMGA RKLK+HRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.425e-70
Identity = 130/133 (97.74%), Postives = 130/133 (97.74%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGKTRGMGA RKLK HRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 2.270e-68
Identity = 128/133 (96.24%), Postives = 128/133 (96.24%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 2.775e-66
Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGKTRGMGAGRKLK  R TQRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.319e-59
Identity = 109/134 (81.34%), Postives = 117/134 (87.31%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGK RG+   RKLK HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALY 134          
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.744e-58
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGK +G+ A RKLKTHR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+  SL+ALF
Sbjct:    1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALF 134          
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.196e-58
Identity = 107/134 (79.85%), Postives = 117/134 (87.31%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGK RG+   RK ++HRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.016e-57
Identity = 103/134 (76.87%), Postives = 117/134 (87.31%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGK +G+   RKLKTHR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR GHAVGDIPGVRFK+VKV+  SL+ALF
Sbjct:    1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALF 134          
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.245e-57
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGK RG+   RK   HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of DC887512 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 5.245e-57
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = -2
Query:  234 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 632
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
The following BLAST results are available for this feature:
BLAST of DC887512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_EUPES1.422e-7097.7440S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS23_FRAAN2.425e-7097.7440S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS232_ARATH2.270e-6896.2440S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH2.775e-6694.7440S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU7.319e-5981.3440S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_BRUMA4.744e-5879.1040S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_DERVA6.196e-5879.8540S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_CAEEL4.016e-5776.8740S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SPOFR5.245e-5778.3640S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_RAT5.245e-5779.1040S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887512 EIC Citrus sinensis cDNA clone EIC0478 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887512 ID=DC887512; Name=DC887512; organism=Citrus sinensis; type=EST; length=654bp
AAGTGANATCCGAATTCTTTAAATAACTATCAAAGAGTTTGCAGGTTAAG
ACAGGTCTCTTCTCTTAAGACCTGGGTTTCTCCTTCTTCTCTTTGAAGAG
AGCCAAGAGAGAGACACCAGAGACCTTCACAACCTTGAACCTGACACTGG
GAATATCAAAAAGAACTATCAAAGAGTTTGCAGGTTAAGACAGGTCTCTT
CTCTTAAGACCTGGGCTTCTCTTTCTTCTCTTTGAAGAGAGCCAAGAGAG
AGACACCAGAGACCTTCACAACCTTGAACCTGACACCAGGAATATCACCG
ACCGCATGTCCCTTACGTCCAAATCCAGCAATCAACACCTCATCATTTTC
TTCAATATAGTTCAAGCAACCATCATTTGGAACAAAAGCGGCAATCTTCT
TTCCGTTTTTGATAAGTTGAACTCTAGCACACTTACGAATAGCAGAGTTA
GGCTGCTTAGCTTCAATACCTATCTTCTCAAGAACAATTCCTTTAGCATG
GGAAGAACCAGCAAATGGCTTCTTCCACTCATTGCCAAGGTGAGACTTTT
TGTATGACTTATCAGCCCACCTTTGAGTCCTACGGTGAGTCTTCAGCTTG
CGACCAGCTCCCATACCACGTGTCTTCCCCATGATTCCTGATTGTAGTTA
CTCG
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