DC887511

Overview
NameDC887511
Unique NameDC887511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6920 contig Csv1_Contig6920:123..544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887511 vs. ExPASy Swiss-Prot
Match: TPPC4_DICDI (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.917e-17
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = -3 
Query:  244 CFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQ 420
            CFQ+ TG KF+V+ +P  Q +E LL  +YELYTDYVLKNPFYE+EM IRC+LFD  L++
Sbjct:   71 CFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKLNR 129
[Close]
BLAST of DC887511 vs. ExPASy Swiss-Prot
Match: TPPC4_RAT (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -3 
Query:  235 CFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 420
            CFQ+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  146 CFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
[Close]
BLAST of DC887511 vs. ExPASy Swiss-Prot
Match: TPPC4_MOUSE (Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -3 
Query:  235 CFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 420
            CFQ+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  146 CFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
[Close]
BLAST of DC887511 vs. ExPASy Swiss-Prot
Match: TPPC4_BOVIN (Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -3 
Query:  235 CFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 420
            CFQ+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  146 CFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
[Close]
BLAST of DC887511 vs. ExPASy Swiss-Prot
Match: TPPC4_PONAB (Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.433e-16
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -3 
Query:  235 CFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 420
            C+Q+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  146 CYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
[Close]
BLAST of DC887511 vs. ExPASy Swiss-Prot
Match: TPPC4_HUMAN (Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.433e-16
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -3 
Query:  235 CFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 420
            C+Q+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  146 CYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
The following BLAST results are available for this feature:
BLAST of DC887511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TPPC4_DICDI6.917e-1762.71Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_RAT1.541e-1659.68Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_MOUSE1.541e-1659.68Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_BOVIN1.541e-1659.68Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_PONAB3.433e-1658.06Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_HUMAN3.433e-1658.06Trafficking protein particle complex subunit 4 OS=... [more]
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Properties
Property NameValue
Genbank descriptionDC887511 EIC Citrus sinensis cDNA clone EIC0477 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887511 ID=DC887511; Name=DC887511; organism=Citrus sinensis; type=EST; length=422bp
GATCATCTGGTGGAAACAAAAACAAAAATATCTAGCATCTTACCTGATTT
CTGCATCGATGACCAAACACCAGATTTTGTCAAAGATCAGTCAAATGTTC
GTACACAAACTACAACCAATTAACCTTCTACTGCACGAATGCAAAGAAAC
AAATCAAGATAGCATAACAAATACAATTTAGTATGATGTATGTTTCAGAG
GAGTTTATCGCCCCAACATGGCAACACGATCCTTCTGTACTGCCTGTGAC
AGATTGATGTCAAATAGTTCACATCGTATAGGCATCTCCATCTCATAAAA
GGGATTCTTCAATACATAATCCGTGTACAACTCATAGATAACTTTCAATA
GAGATTCCATGTGCTGAGTCCCAGGTTCACACACTACAAAGAACTTTGTC
CCAGTGAGAGATTGGAAGCAAT
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