DC887506

Overview
NameDC887506
Unique NameDC887506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1707 contig Csv1_Contig1707:440..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887506 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.289e-27
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = -2 
Query:  164 AQNXVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYAXFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 448
            AQ+ V EA+TGGP+AA +YAA E K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:  114 AQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208
The following BLAST results are available for this feature:
BLAST of DC887506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1736_ARATH5.289e-2757.89REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionDC887506 EIC Citrus sinensis cDNA clone EIC0471 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887506 ID=DC887506; Name=DC887506; organism=Citrus sinensis; type=EST; length=449bp
TTCAAGCCTAGAATTTTGCAAACCAGACCACTAGATGAAGCAAACTCATC
AGACAAAAAGTAAATTCTTAGTCAGAATCTGAGCTTGAATCCTTTTCCTT
TGCATCTTCTTTCTTTGGAGCATCTTCTTTCTCTGGAGCATCTTCTTTCT
TGGGAGCTTCACTCTGCTTAAAAGCTTTGGCTATGTCATCAATGGGAACC
AAAGGAAGATAGCCAAAGACTGTGTAACCCTTCTTCGTCATCTCCACGAC
AAGATGGTTATACTTCTTGGACCACTGTGCAGCTGTGGGAACAGCCATAT
CTGCCATTGTGTGGAACANTGCATAGTGGTTTAGTTTATACCATGCTTTC
ACGGAATTTGTTACCAGAAGGTGTTTAGACTCAGCAGCAGCATAATGGAC
AGCTGCTCGAGGCCCCCCGGTTTGGGCCTCACTCACAANATTTTGAGCT
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