DC887497

Overview
NameDC887497
Unique NameDC887497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887497 vs. ExPASy Swiss-Prot
Match: KEULE_ARATH (SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.313e-37
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = -2
Query:  419 AAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFIT 673
            AA SMRSRRTPTWA+PR SDDGYSSDSVL+HASSDF+KMGQRIFVFIVGGATRSEL+VCHKL+ KL REV+LGS+SLDDPPQFIT
Sbjct:  564 AAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCHKLSTKLKREVILGSTSLDDPPQFIT 648          
BLAST of DC887497 vs. ExPASy Swiss-Prot
Match: SEC1A_ARATH (Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = -2
Query:  419 HSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFIT 667
            HSMRSRRT TWARP SSDDGYSSDSVLK AS++FKK+GQRIFVFI+GGATRSELRVCHKLT+ L REVVLGS+S DDPPQ+IT
Sbjct:  568 HSMRSRRTATWARPHSSDDGYSSDSVLKSASTEFKKLGQRIFVFIIGGATRSELRVCHKLTSSLRREVVLGSTSFDDPPQYIT 650          
BLAST of DC887497 vs. ExPASy Swiss-Prot
Match: SEC1A_ORYSJ (Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.122e-33
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = -2
Query:  404 AHSMRSRRTP-TWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITVFRDL 670
            A SMRSRRT  TWARPR SDDGYSSDSVLKH SS+ +K+GQR+FVF++GGATRSEL   HKL++KL RE++LGSSSLDDPPQFIT  + L
Sbjct:  564 AQSMRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSELCAAHKLSSKLKREIILGSSSLDDPPQFITKLKML 653          

HSP 2 Score: 26.9498 bits (58), Expect = 5.122e-33
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = -3
Query:  289 LQKLKMLTAHELSLDDIQI 345
            + KLKML+  +L+LDD+QI
Sbjct:  647 ITKLKMLSTDDLTLDDLQI 665          
BLAST of DC887497 vs. ExPASy Swiss-Prot
Match: SEC1B_ORYSJ (Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = -2
Query:  404 SMRSRRTPTWARPRSSDDGYSSDS-VLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITVFRDL 664
            S RSRRTPTWA+ R+SDD  SSDS VL+H S+DFK++G RIFVF++GGATRSELR  HKLT KL RE+VLGSSS+DDPPQFI+  + L
Sbjct:  564 SRRSRRTPTWAKSRNSDDSQSSDSSVLRHGSNDFKRLGNRIFVFMIGGATRSELRTVHKLTMKLKREIVLGSSSIDDPPQFISKLKML 651          
BLAST of DC887497 vs. ExPASy Swiss-Prot
Match: SEC1B_ARATH (Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 63/84 (75.00%), Postives = 68/84 (80.95%), Query Frame = -2
Query:  404 SRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITVFRDL 655
            SRRTPTWAR   SDDGY SDSVL  ASS FK+ GQRIFVFIVGGATRSELRVCHKLT KL+REV+LGSSS  DP  F+T  + L
Sbjct:  566 SRRTPTWARRHLSDDGYFSDSVLGRASSGFKRKGQRIFVFIVGGATRSELRVCHKLTEKLDREVILGSSSFLDPLTFLTKMKQL 649          
The following BLAST results are available for this feature:
BLAST of DC887497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KEULE_ARATH1.313e-3787.06SNARE-interacting protein KEULE OS=Arabidopsis tha... [more]
SEC1A_ARATH6.101e-3584.34Protein transport Sec1a OS=Arabidopsis thaliana GN... [more]
SEC1A_ORYSJ5.122e-3373.33Probable protein transport Sec1a OS=Oryza sativa s... [more]
SEC1B_ORYSJ8.533e-2970.45Probable protein transport Sec1b OS=Oryza sativa s... [more]
SEC1B_ARATH7.224e-2875.00Protein transport Sec1b OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionDC887497 EIC Citrus sinensis cDNA clone EIC0455 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887497 ID=DC887497; Name=DC887497; organism=Citrus sinensis; type=EST; length=683bp
GAATTCAATCGGTTACATCTATCAAACACAACAGGACTATACATGTGAAT
TACTTGCTGAATCCAGCATAAACATTATAATAAAAAACCAGGAAGCACCT
CCTGAGCCAGGCAGGACGCTCAACTGAAATATTCTAGGCACTATAGATAT
CCACTACAGATATCTAACAGCATACATTTTTTGCATCATCAGTTAAGAAA
ATGGAGTGATATACAGTAAATATAGGAGGATCAATCAGCAATTTGTTAGT
GAAATTAAAGCATTCCAGGTCTCTCTGCCCACCATTTATATCTGGATATC
ATCTAATGAAAGTTCATGAGCTGTCAGCATCTTCAGTTTCTGCAAACCAG
ACAAATGAAAGTTAAACAAGGCTGGCACATTTGGGCGGAAAGGAAAAACA
TTTTAAGTCTCGAAATACCGTAATAAACTGAGGAGGATCATCTAGACTTG
ATGAGCCGAGAACAACTTCTCTATTCAGTTTTGCTGTCAGCTTGTGACAA
ACCCTCAACTCCGATCTAGTGGCGCCACCGACAATAAATACAAAAATACG
TTGACCCATCTTCTTAAAATCACTCGATGCATGTTTTAGTACTGAATCAC
TTGAATATCCATCATCAGAGCTCCGAGGACGAGCCCACGTTGGTGTCCGT
CTCGATCTCATTGAATGAGCAGCTGGAACTTCA
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