DC887488

Overview
NameDC887488
Unique NameDC887488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length504
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3314 contig Csv1_Contig3314:67..570. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887488 vs. ExPASy Swiss-Prot
Match: NO93_SOYBN (Early nodulin-93 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.706e-32
Identity = 77/107 (71.96%), Postives = 77/107 (71.96%), Query Frame = -3 
Query:   95 MAKNVAQSPLERTSLVSLDHKLAMAKRCSHEXXXXXXXXXXXXXXXXAIPTLASVRMLPWARANLNHTAQALIISTVAGAAYFIVADKTVLATARKNSFQQASNMEA 415
            MAK    SPLER SL SLD KLA AKRCSHE                AIPTLASVRMLPWARANLNHTAQALIIST   AAYFIVADKTVLATARKNSF Q SN EA
Sbjct:    1 MAKG--NSPLERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTATAAAYFIVADKTVLATARKNSFNQPSNSEA 105
The following BLAST results are available for this feature:
BLAST of DC887488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NO93_SOYBN9.706e-3271.96Early nodulin-93 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionDC887488 EIC Citrus sinensis cDNA clone EIC0445 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887488 ID=DC887488; Name=DC887488; organism=Citrus sinensis; type=EST; length=504bp
GGATATACATCCTAAGTTGGTTATTGGAATATGATGATAACGCAGTACAA
CATAAGCGAATCATATAATCATTTAATTAGCAATTCAAAACCTATGCTTC
CATGTTAGAGGCTTGCTGGAAGGAGTTTTTTCGTGCTGTGGCCAGAACAG
TCTTGTCAGCCACAATGAAATATGCCGCTCCAGCCACTGTTGAGATAATA
AGAGCTTGAGCAGTGTGATTGAGGTTGGCTCTAGCCCAAGGAAGCATCCT
CACACTCGCGAGCGTTGGAATGGCAGTAGCAACCGTAGCAACAACAGCTG
CCTTAGCTCCCGCAANTACACCCTCATGAGAGCAACGCTTAGCCATAGCC
AGTTTATGGTCAAGTGAAACCAAGCTGGTCCTTTCAAGAGGAGACTGAGC
TACATTCTTTGCCATTGTTTGAGAAAGTTAAAATGGAGAATATGTTAATA
ATGAGCTGAGGAAATTGACGAGGCTGTGTTATATTAGTTGATCAATTGAA
GCTT
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