DC887483

Overview
NameDC887483
Unique NameDC887483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2029 contig Csv1_Contig2029:213..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E2_WHEAT (Eukaryotic translation initiation factor 4E-2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.096e-57
Identity = 99/126 (78.57%), Postives = 113/126 (89.68%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            VEEFWCLY+QIF+PS+L  +ADFHLFK G+EPKWEDPECANGGKW+V S+RK NLDTMWLET MALIGEQFDE  EICGVVASVRQRQDKL+LWTKTA+NEA Q+ IGKKWKE++D  D++ YSFH
Sbjct:   68 VEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASVRQRQDKLSLWTKTASNEAVQVDIGKKWKEVIDYNDKMVYSFH 193          
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E2_MAIZE (Eukaryotic translation initiation factor 4E-2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.089e-55
Identity = 92/126 (73.02%), Postives = 111/126 (88.10%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            VEEFW +Y+QIF+PS+L  NADFHLFK G+EPKWEDPECANGGKW+V  NRKA  +TMWLET+MALIGEQFDE ++ICG+VASVR R DKLALWT+TA+NEA Q+ IGKKWK+++D  D+ITY+FH
Sbjct:   75 VEEFWSMYDQIFRPSKLSGNADFHLFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETLMALIGEQFDETEDICGIVASVRARGDKLALWTRTASNEAVQVNIGKKWKDVIDYNDKITYTFH 200          
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E2_ORYSJ (Eukaryotic translation initiation factor 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.134e-54
Identity = 94/126 (74.60%), Postives = 111/126 (88.10%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            VEEFW LY+QIF+PS++ +NADFHLFK G+EPKWEDPECANGGKW+V  +RK  L+ MWLET+MALIGEQFDE +EICGVVASVRQR DKLALWT+TA+NEA Q+ IGKKWKEI+D  D++ YSFH
Sbjct:   65 VEEFWGLYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFH 190          
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E2_ARATH (Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.873e-49
Identity = 93/130 (71.54%), Postives = 109/130 (83.85%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWS--VTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVR--QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            VE+FW L+E IF+ S+L  NA+ HLFK G+EPKWEDPECANGGKW+  VT+NRK  LD  WLET+MALIGEQFDE DEICGVVASVR   +QDKL+LWT+T +NEA  MGIGKKWKEILDVTD+IT++ H
Sbjct:   59 VEDFWGLHETIFQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEADEICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWKEILDVTDKITFNNH 188          
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E1_WHEAT (Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.438e-41
Identity = 77/126 (61.11%), Postives = 95/126 (75.40%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            VE+FW LY  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+++  R  + DT WL T++A+IGEQFD  DEICG V SVRQ+Q+++A+WTK AANEAAQ+ IGK+WKE LD  D I +  H
Sbjct:   75 VEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKS-DTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVH 199          
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E1_ORYSJ (Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.203e-41
Identity = 77/126 (61.11%), Postives = 94/126 (74.60%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            VE+FW LY  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+ +  R  + DTMWL T++A+IGEQFD  DEICG V SVR +Q+++A+WTK AANEAAQ+ IGK+WKE LD  D I +  H
Sbjct:   87 VEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKS-DTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVH 211          
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E1_MAIZE (Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.183e-41
Identity = 77/126 (61.11%), Postives = 95/126 (75.40%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            VEEFW LY  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+++  R  + DT WL T++A+IGEQFD  DEICG V SVR +Q+++A+WTK AANEAAQ+ IGK+WKE+LD  D I +  H
Sbjct:   78 VEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKS-DTFWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQVSIGKQWKELLDYKDSIGFIVH 202          
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E1_ARATH (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.806e-37
Identity = 70/126 (55.56%), Postives = 93/126 (73.81%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            VEEFW LY  +  PS+L   ADF+ FK  IEPKWEDP CANGGKW++T  ++ + D  WL T++ALIGEQFD  DEICG V ++R +Q+++++WTK A+NEAAQ+ IGK+WKE LD  + I +  H
Sbjct:   95 VEEFWSLYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKS-DKSWLYTLLALIGEQFDHGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNSIGFIIH 219          
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E4_ARATH (Putative eukaryotic translation initiation factor 4E-4 OS=Arabidopsis thaliana GN=At1g29550 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.291e-36
Identity = 69/126 (54.76%), Postives = 88/126 (69.84%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            +EEFW LY  I  P++    AD + FK  IEPKWEDP CANGGKWS+    KA L+  WL T++AL+GEQFD+ DEICG V + R R D+++LWTK AANE AQ+ IGK+WKE+L   + I +  H
Sbjct:  100 IEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPICANGGKWSMMFP-KATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARGDRISLWTKNAANEEAQLSIGKQWKELLGYNETIGFIVH 224          
BLAST of DC887483 vs. ExPASy Swiss-Prot
Match: IF4E5_ARATH (Eukaryotic translation initiation factor 4E-5 OS=Arabidopsis thaliana GN=At1g29590 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 9.025e-36
Identity = 68/126 (53.97%), Postives = 89/126 (70.63%), Query Frame = -2
Query:  205 VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 582
            +EEFW LY  I  P++    +D + FK  IEPKWEDP CANGGKW++   R A L++ WL T++AL+GEQFD+ DEICG V + R R D+++LWTK AANE AQ+ IGK+WKE+L   D I +  H
Sbjct:  100 IEEFWSLYNNIHPPTKWVSGSDLYCFKDKIEPKWEDPICANGGKWTMFFPR-ATLESNWLNTLLALVGEQFDQGDEICGAVLNFRTRGDRISLWTKKAANEEAQLSIGKQWKELLGYNDTIGFIVH 224          
The following BLAST results are available for this feature:
BLAST of DC887483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E2_WHEAT1.096e-5778.57Eukaryotic translation initiation factor 4E-2 OS=T... [more]
IF4E2_MAIZE5.089e-5573.02Eukaryotic translation initiation factor 4E-2 OS=Z... [more]
IF4E2_ORYSJ1.134e-5474.60Eukaryotic translation initiation factor 4E-2 OS=O... [more]
IF4E2_ARATH1.873e-4971.54Eukaryotic translation initiation factor 4E-2 OS=A... [more]
IF4E1_WHEAT1.438e-4161.11Eukaryotic translation initiation factor 4E-1 OS=T... [more]
IF4E1_ORYSJ3.203e-4161.11Eukaryotic translation initiation factor 4E-1 OS=O... [more]
IF4E1_MAIZE4.183e-4161.11Eukaryotic translation initiation factor 4E-1 OS=Z... [more]
IF4E1_ARATH2.806e-3755.56Eukaryotic translation initiation factor 4E-1 OS=A... [more]
IF4E4_ARATH5.291e-3654.76Putative eukaryotic translation initiation factor ... [more]
IF4E5_ARATH9.025e-3653.97Eukaryotic translation initiation factor 4E-5 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionDC887483 EIC Citrus sinensis cDNA clone EIC0435 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887483 ID=DC887483; Name=DC887483; organism=Citrus sinensis; type=EST; length=583bp
ATGTCTAAAGGCATATGGCAACACATTTGAAGTATCTAATGTTTAATTGT
TTATGGTAAATAGAGCACAAAAAATACAGAAACAGATTCATCGGTCTAAG
CCACAATTTGGCAACTACAAGTACAGGCTACTGCGACAAAATGGTCACTT
TTGAGTTCACACACTGTATCGACTTTTCACTGATCGATCCCTTCTAGAGT
CATCGTGGAAGCTGTAAGTGATCCTATCAGTGACATCAAGGATCTCCTTC
CACTTCTTTCCAATGCCCATCTGAGCAGCTTCATTTGCTGCTGTCTTGGT
CCATAAGGCAAGTTTGTCCTGCCTCTGGCGTACACTAGCAACAACTCCAC
AAATCTCATCCACCTCATCAAATTGCTCTCCAATCAGGGCCATCATTGTT
TCAAGCCACATGGTATCAAGGTTAGCCTTCCTGTTGCTAGTGACCGACCA
CTTTCCTCCATTTGCACACTCAGGATCTTCCCACTTTGGTTCTATCCCAG
TTTTGAACAAATGGAAATCCGCATTCATTGGCAACCGGCTTGGCTTGAAT
ATCTGTTCATACAAACACCAAAATTCTTCGACA
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