DC887471

Overview
NameDC887471
Unique NameDC887471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2889 contig Csv1_Contig2889:342..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.289e-18
Identity = 47/71 (66.20%), Postives = 50/71 (70.42%), Query Frame = -3
Query:  167 DAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGSAAGPKIEEVD 379
            DA+DQAI WL+SNQLAE DEFEDKMKELE ICNPIIAKMYQ                  GS+AGPKIEEVD
Sbjct:  580 DAVDQAISWLESNQLAEVDEFEDKMKELEGICNPIIAKMYQGAGGDAGVPMDDDAPPSGGSSAGPKIEEVD 650          
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.861e-17
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = -3
Query:  167 DAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ---XXXXXXXXXXXXXXXXXXGSAAGPKIEEVD 379
            DAID+AI+WLD+NQLAEADEFEDKMKELESICNPIIAKMYQ                      + AGPKIEEVD
Sbjct:  578 DAIDEAIKWLDNNQLAEADEFEDKMKELESICNPIIAKMYQGGAGGATMDEDGPSVGGSAGSQTGAGPKIEEVD 651          
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.175e-17
Identity = 47/71 (66.20%), Postives = 50/71 (70.42%), Query Frame = -3
Query:  167 DAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGSAAGPKIEEVD 379
            DAI+QAIQWLD NQLAEA+EFEDKMKELES+CNPIIAKMYQ                  G  AGPKIEEVD
Sbjct:  578 DAIEQAIQWLDGNQLAEAEEFEDKMKELESLCNPIIAKMYQ----GAGGDMDDEGPAPSGGGAGPKIEEVD 644          
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.147e-17
Identity = 47/74 (63.51%), Postives = 50/74 (67.57%), Query Frame = -3
Query:  167 DAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGSA---AGPKIEEVD 379
            D+I+QAIQWL+ NQLAEADEFEDKMKELESICNPIIAKMYQ                    A   AGPKIEEVD
Sbjct:  578 DSIEQAIQWLEGNQLAEADEFEDKMKELESICNPIIAKMYQGAGGEAGGPGASGMDDDAPPASGGAGPKIEEVD 651          
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  167 DAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGS-----AAGPKIEEVD 379
            D+I++AIQWLD NQL EADEFEDKMKELES+CNPIIAKMYQ                   +      AGPKIEEVD
Sbjct:  578 DSIEEAIQWLDGNQLGEADEFEDKMKELESVCNPIIAKMYQGGAGGEAGGPGASGMDEDEAPPASGGAGPKIEEVD 653          
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 43/72 (59.72%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  167 DAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGS-AAGPKIEEVD 379
            D+I+ AI+WL++NQLAE DEFEDKMKELESICNPIIAKMYQ                   +  AGPKIEEVD
Sbjct:  578 DSIEAAIEWLEANQLAECDEFEDKMKELESICNPIIAKMYQGGEAGGPAAGGMDEDVPPSAGGAGPKIEEVD 649          
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.334e-15
Identity = 45/72 (62.50%), Postives = 47/72 (65.28%), Query Frame = -3
Query:  167 DAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ-XXXXXXXXXXXXXXXXXXGSAAGPKIEEVD 379
            DA+D AI WLDSNQLAE +EFEDKMKELE ICNPIIAKMY                    GS AGPKIEEVD
Sbjct:  574 DAVDGAISWLDSNQLAEVEEFEDKMKELEGICNPIIAKMYXGEGAGMGAAAGMDEDAPSGGSGAGPKIEEVD 645          
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.275e-15
Identity = 44/69 (63.77%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  173 DAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGSAAGPKIEE 379
            +AID +IQWLD NQLAEADEF+DKMKELESICNPIIAKMYQ                  G  AGPKIEE
Sbjct:  578 EAIDASIQWLDGNQLAEADEFDDKMKELESICNPIIAKMYQ-GAGGDMGGGMEDEGPTSGGGAGPKIEE 645          
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.926e-14
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = -3
Query:  167 AIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXGSAAGPKIEEVD 376
            A++ AIQWL+ NQ+AE DEFEDK KELE ICNPIIAKMYQ                   + AGPKIEEVD
Sbjct:  578 AVEDAIQWLEGNQMAEVDEFEDKQKELEGICNPIIAKMYQ--GAAGPGGDVPMGADMPAAGAGPKIEEVD 645          
BLAST of DC887471 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.093e-13
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = -3
Query:  167 AIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ-----XXXXXXXXXXXXXXXXXXGSAAGPKIEEVD 376
            A+++AI+WL+ NQLAE DE EDK+KELE +CNPIIA++YQ                        S AGPKIEEVD
Sbjct:  581 AVNEAIEWLEKNQLAEVDELEDKLKELEGLCNPIIARLYQGRGDVPIGGPGDMPGGGYGGSRGSSGAGPKIEEVD 655          
The following BLAST results are available for this feature:
BLAST of DC887471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HSP71_SOLLC1.289e-1866.20Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP7C_PETHY1.861e-1763.51Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP72_SOLLC3.175e-1766.20Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP71_ARATH4.147e-1763.51Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP72_ARATH3.511e-1657.89Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP73_ARATH1.021e-1559.72Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_MAIZE1.334e-1562.50Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP7E_SPIOL2.275e-1563.77Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP70_SOYBN1.926e-1457.14Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP70_DAUCA8.093e-1349.33Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

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Properties
Property NameValue
Genbank descriptionDC887471 EIC Citrus sinensis cDNA clone EIC0416 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887471 ID=DC887471; Name=DC887471; organism=Citrus sinensis; type=EST; length=381bp
TATAANTTGGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAAGG
AAAAATTAATATTCATCCTAAGGCTAAAGCAACATAAGATAAAAACCAAA
CGTCCAGTTTTCCCACCGTCAAAAAACCGACCTCCCACAAACACAGCAAA
ATAAACTGGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGCGGCACTG
CCACCAGCTGGAGGAGTATCATCATCCATGTCACCGCCCATATCACCACC
AGCACCTTGATACATCTTGGCAATGATGGGATTGCAGATGCTCTCAAGCT
CCTTCATCTTGTCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTATCA
AGCCATTGAATTGCCTGGTCAATGGCATCCT
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