DC887467
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 5.807e-65 Identity = 127/170 (74.71%), Postives = 137/170 (80.59%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 FYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+ KDDQK+VD L+KAIE VP+LKAYLGARFSL+AGMKPHELVF Sbjct: 65 FYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 2.697e-62 Identity = 123/170 (72.35%), Postives = 134/170 (78.82%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 FYPA+DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K K+DQK+VD LIK+IEAVP+LK YLGARFSL GMKPHELVF Sbjct: 64 FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 1.748e-61 Identity = 124/170 (72.94%), Postives = 132/170 (77.65%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 FYPA+DVKKPL N+R KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K KDDQK+VD LIKAIEAVP+LK YLGARFSL+ GMKPHELVF Sbjct: 64 FYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 6.644e-61 Identity = 123/170 (72.35%), Postives = 131/170 (77.06%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 FYPA+DVKKPL N+R KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K KDDQK+VD LIKAIEAVP+LK YLGARFSL+ GMKPHELVF Sbjct: 64 FYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39 Identity = 87/170 (51.18%), Postives = 107/170 (62.94%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 +YP++DV P ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LLV+GPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE +DQK VD L+ I+ P LK YL A FSL+ G KPH L F Sbjct: 9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38 Identity = 87/170 (51.18%), Postives = 106/170 (62.35%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 +YP++DV ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LL+SGPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE +DQK VD LI I+ P LK YL A FSL+ G KPH L F Sbjct: 9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33 Identity = 83/176 (47.16%), Postives = 110/176 (62.50%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 +YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+ DQK+VD+ +++ I+AVP L+ YL + F+L G+ PH+LVF Sbjct: 111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 142.895 bits (359), Expect = 1.542e-33 Identity = 88/176 (50.00%), Postives = 109/176 (61.93%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 +YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP IN VPLRR +Q +VI TSTKVDIS V + K D YF K+ K DQK+VD ++ I+AVP L+ YL ++FSL GM PH+LVF Sbjct: 123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 142.51 bits (358), Expect = 2.014e-33 Identity = 87/176 (49.43%), Postives = 110/176 (62.50%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 +YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTKVDIS V + K D YF K+ K DQK+VD+ ++ I+AVP L+ YL ++FSL GM PH+LVF Sbjct: 125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3) HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33 Identity = 85/176 (48.30%), Postives = 108/176 (61.36%), Query Frame = -1 Query: 141 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650 +YP +DV + L++ K KP KLRASITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+ DQK+VD+ ++ I+AVP L+ YL + F+L G+ PH+LVF Sbjct: 115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQISEQRKV-DQKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288 The following BLAST results are available for this feature:
BLAST of DC887467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887467 ID=DC887467; Name=DC887467; organism=Citrus sinensis; type=EST; length=692bpback to top |