DC887467

Overview
NameDC887467
Unique NameDC887467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887467_ssr328 microsatellite DC887467_ssr328:328..339. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13856 contig Csv1_Contig13856:212..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.807e-65
Identity = 127/170 (74.71%), Postives = 137/170 (80.59%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            FYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+                           KDDQK+VD  L+KAIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct:   65 FYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.697e-62
Identity = 123/170 (72.35%), Postives = 134/170 (78.82%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            FYPA+DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K                            K+DQK+VD  LIK+IEAVP+LK YLGARFSL  GMKPHELVF
Sbjct:   64 FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.748e-61
Identity = 124/170 (72.94%), Postives = 132/170 (77.65%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            FYPA+DVKKPL N+R  KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                            KDDQK+VD  LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:   64 FYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.644e-61
Identity = 123/170 (72.35%), Postives = 131/170 (77.06%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            FYPA+DVKKPL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                            KDDQK+VD  LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:   64 FYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 87/170 (51.18%), Postives = 107/170 (62.94%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            +YP++DV  P   ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LLV+GPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  L+  I+  P LK YL A FSL+ G KPH L F
Sbjct:    9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 87/170 (51.18%), Postives = 106/170 (62.35%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            +YP++DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  LI  I+  P LK YL A FSL+ G KPH L F
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33
Identity = 83/176 (47.16%), Postives = 110/176 (62.50%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:  111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.542e-33
Identity = 88/176 (50.00%), Postives = 109/176 (61.93%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TSTKVDIS V + K   D YF K+                           K DQK+VD  ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 142.51 bits (358), Expect = 2.014e-33
Identity = 87/176 (49.43%), Postives = 110/176 (62.50%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF K+                           K DQK+VD+ ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
BLAST of DC887467 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 85/176 (48.30%), Postives = 108/176 (61.36%), Query Frame = -1
Query:  141 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 650
            +YP +DV + L++  K KP      KLRASITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+                             DQK+VD+ ++  I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:  115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQISEQRKV-DQKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288          
The following BLAST results are available for this feature:
BLAST of DC887467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR5.807e-6574.7160S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH2.697e-6272.3560S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH1.748e-6172.9460S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH6.644e-6172.3560S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6B_YEAST9.335e-3951.1860S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST2.716e-3851.1860S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_PIG1.181e-3347.1660S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_MOUSE1.542e-3350.0060S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_RAT2.014e-3349.4360S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_CHILA2.631e-3348.3060S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]

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Properties
Property NameValue
Genbank descriptionDC887467 EIC Citrus sinensis cDNA clone EIC0409 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887467 ID=DC887467; Name=DC887467; organism=Citrus sinensis; type=EST; length=692bp
TTTCATTTGCCTAACATCATACCAAAATTTAGATGTCTGATCCCATGAAA
CAAAGATTACAACTGGTAAAATAAATTTCAGACAAAACATAACAAGTAGG
AAAAAGCAAAGCAATCCTAAATTGTTTCAACATGTTTTCAGAAGACAAGT
TCATGAGGTTTCATGCCGGCCCTGAGGGAAAACCTAGCACCAAGGTAAGC
CTTCAAGTCTGGAACAGCCTCAATGGCCTTGATCAATGGTGTATCAACGG
ACTTCTGATCATCCTTCTTCTCCTGAGGAAGCGACTTCTTCTCCTCTTTC
TCTGACTCAAAGAACTCATTCTCTCCTTTCTTCTTCTTCCTCTCGACTTC
CTTGGCAAAATACTTATCATCAAACTTATCCACATTCACTCCGGAGATAT
CAACTTTGGTAGAAGTTCCAATCACGTAAGACTGGTTCACACGTCGTAAA
GGAACACCATTGATCTTAAATGGCCCAGAAACTAGAAGCAACCCAGATGG
AAGCTGCTTCAGGAACACAACTCTCTTACCCTTGAACCTTCCAGCTAGTA
TAATCAGCACTGTCCCTGGGGTGATGCTTGCTCTAAGCTTGGTGGGTTTA
GGCTTGCGCTTGTTGACGAGTGGTTTCTTGACGTCATCGGCGGGGTAAAA
CTTGGGGGGCTTCTCGGCGGGAGCAGCGGCTTTGGGCTTAGG
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