DC887464

Overview
NameDC887464
Unique NameDC887464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887464_ssr255 microsatellite DC887464_ssr255:255..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2775 contig Csv1_Contig2775:293..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSRP1_VICFA (FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.523e-39
Identity = 72/88 (81.82%), Postives = 86/88 (97.73%), Query Frame = -1
Query:  144 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESDSA 407
            PNAPKRA+SGF+FFSQMEREN+KK+NPGI+FTDVGRVLGE+WK +S EE+EPYE+KA+ADKKRYKDEISGYKNP+P+++DSGNESDSA
Sbjct:  555 PNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQPMNVDSGNESDSA 642          
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.820e-34
Identity = 62/87 (71.26%), Postives = 82/87 (94.25%), Query Frame = -1
Query:  147 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESDS 407
            PNAPKRAMSGF+FFSQMER+NIKK +PGIAF +VG+VLG++W++MS +++EPYE+KA+ DK+RYKDEIS YKNP+P+++DSGN+SDS
Sbjct:  559 PNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMNVDSGNDSDS 645          
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSRP1_CATRO (FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 55/88 (62.50%), Postives = 71/88 (80.68%), Query Frame = -1
Query:  144 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESDSA 407
            PNAPK ++S F+FFSQ EREN+KK NPGIAFTDVG+VLG+R  K  + ++   + +  ADKKRY DEIS YKNP+P+++DSGN+SDSA
Sbjct:  553 PNAPK-SISAFMFFSQTERENVKKDNPGIAFTDVGKVLGDRCNKCQLRKKHLLKQRLVADKKRYTDEISNYKNPQPMNVDSGNDSDSA 639          
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSRP1_MAIZE (FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = -1
Query:  150 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESD 407
            PNAPKRAM+ F++FS  ER N+K SNP +  T++ + LGE W+KMS EE++PY  +A+ DKKRY+ E + Y+    VD+DSGNESD
Sbjct:  554 PNAPKRAMTPFMYFSMAERGNMKSSNPDLPTTEIAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYEKESAVYRGEATVDVDSGNESD 639          
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSP1B_ORYSJ (FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica GN=SSRP1-B PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 43/86 (50.00%), Postives = 65/86 (75.58%), Query Frame = -1
Query:  150 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESD 407
            PNAPKRA++ F++FS+ ER N+K SNP +A T++ + LGERW+KM+ EE++PY  +++ DKKRY +E + Y+    +D+DSG  SD
Sbjct:  555 PNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAAYRGAAAMDVDSGPASD 640          
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: NHP6_NEUCR (Non-histone chromosomal protein 6 OS=Neurospora crassa GN=nhp-6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = -1
Query:  195 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 407
            PNAPKR +S ++FF+  +REN+++ NPG++F  VG++LGERWK +S ++R PYE+KA ADKKRY+DE   Y
Sbjct:   23 PNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAY 93          
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: NHP6_GIBZE (Non-histone chromosomal protein 6 OS=Gibberella zeae GN=NHP6 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = -1
Query:  195 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 407
            PNAPKR +S ++FF+  +REN+++ NPGI+F  VG++LGERWK ++ ++R PYE+KA ADKKRY+DE   Y
Sbjct:   21 PNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAY 91          
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: NHP6_EMENI (Non-histone chromosomal protein 6 OS=Emericella nidulans GN=nhp6 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 40/72 (55.56%), Postives = 57/72 (79.17%), Query Frame = -1
Query:  192 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 407
            PNAPKR +S ++FF+   R+ +++ NPGI+F  VG++LGE+WK +S +ER+PYE KA ADKKRY+DE + YK
Sbjct:   24 PNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYK 95          
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: NHP6_ASPFU (Non-histone chromosomal protein 6 OS=Aspergillus fumigatus GN=nhp6 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = -1
Query:  174 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVD 407
            PNAPKR +S ++FF+   R+ +++ NPGI+F  VG++LGERWK +S  ER PYE KA ADKKRY+DE + Y   +  D
Sbjct:   22 PNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAADKKRYEDEKASYNAAQDED 99          
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSP1A_ORYSJ (FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = -1
Query:  150 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDS---GNESD 407
            PNAPKRAM+ F++FS  ER N+K +NP +  T++ + LGE W+KM+ EE++PY  +++ DKKRY+ E + Y+    +D+DS   GNESD
Sbjct:  553 PNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYRGAAAMDVDSGSGGNESD 641          
The following BLAST results are available for this feature:
BLAST of DC887464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
SSRP1_VICFA3.523e-3981.82FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 ... [more]
SSRP1_ARATH5.820e-3471.26FACT complex subunit SSRP1 OS=Arabidopsis thaliana... [more]
SSRP1_CATRO9.951e-2662.50FACT complex subunit SSRP1 OS=Catharanthus roseus ... [more]
SSRP1_MAIZE6.675e-2254.65FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE... [more]
SSP1B_ORYSJ3.313e-2150.00FACT complex subunit SSRP1-B OS=Oryza sativa subsp... [more]
NHP6_NEUCR6.247e-2056.34Non-histone chromosomal protein 6 OS=Neurospora cr... [more]
NHP6_GIBZE1.392e-1956.34Non-histone chromosomal protein 6 OS=Gibberella ze... [more]
NHP6_EMENI2.374e-1955.56Non-histone chromosomal protein 6 OS=Emericella ni... [more]
NHP6_ASPFU5.289e-1952.56Non-histone chromosomal protein 6 OS=Aspergillus f... [more]
SSP1A_ORYSJ6.907e-1948.31FACT complex subunit SSRP1-A OS=Oryza sativa subsp... [more]

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Properties
Property NameValue
Genbank descriptionDC887464 EIC Citrus sinensis cDNA clone EIC0405 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887464 ID=DC887464; Name=DC887464; organism=Citrus sinensis; type=EST; length=731bp
CATCTAGGGCAGTTAGAATCACCTATACAACATGATTGCCCAAGAAGCTT
AAGGTAGATGTAAAATGCAGCCCATAATAATAAGATAGAAGTCCATCACA
ATCCTAAACTGATGATTTAGTGATTCTTTGCTCTTGGTATCTATGCACTG
TCAGACTCATTTCCAGAGTCAATATCCACTGGCTTGGGATTCTTGTAACC
ACTGATTTCATCTTTGTAACGTTTTTTATCAGCACGAGCTTTGGATTCAT
ATGGCTCTCTCTCTTCCACGCTCATCTTTTTCCACCTCTCTCCGAGGACT
CTTCCAACATCCGTAAATGCAATTCCAGGATTACTTTTCTTGATATTCTC
TCTTTCCATTTGAGAGAAAAAAATAAAACCAGACATTGCCCTCTTTGGTG
CATTCGGATCCTTCTTCTTTTTCTGTTTTTTCTTCTTCCCATCTTCATCT
CCATCCCTGGATTTCTTCTTGGAAGTAGATGCCTTCACAGATGAAGACTC
TTTCTTTGATTCCTTTTTGGCAGGTTTCTCTTTCTCTCCTCCACTTTCAC
TAGCATCAGAATCCTCCTCCCCAGAATCATCAGTTGGTGACCCTCCATCG
TCTTTATCAGCTACAAAATCTGAATCCTCTTCATCACTCTCATCACCACC
AGCTTCATTCTTAATTCGCTCAAGATGAGGATCAACTGCATCATCATCGT
CTTCCTGAANAACAGCAGCCACCCCATCTGT
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