DC887464
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSRP1_VICFA (FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.523e-39 Identity = 72/88 (81.82%), Postives = 86/88 (97.73%), Query Frame = -1 Query: 144 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESDSA 407 PNAPKRA+SGF+FFSQMEREN+KK+NPGI+FTDVGRVLGE+WK +S EE+EPYE+KA+ADKKRYKDEISGYKNP+P+++DSGNESDSA Sbjct: 555 PNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQPMNVDSGNESDSA 642
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 5.820e-34 Identity = 62/87 (71.26%), Postives = 82/87 (94.25%), Query Frame = -1 Query: 147 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESDS 407 PNAPKRAMSGF+FFSQMER+NIKK +PGIAF +VG+VLG++W++MS +++EPYE+KA+ DK+RYKDEIS YKNP+P+++DSGN+SDS Sbjct: 559 PNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMNVDSGNDSDS 645
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSRP1_CATRO (FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26 Identity = 55/88 (62.50%), Postives = 71/88 (80.68%), Query Frame = -1 Query: 144 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESDSA 407 PNAPK ++S F+FFSQ EREN+KK NPGIAFTDVG+VLG+R K + ++ + + ADKKRY DEIS YKNP+P+++DSGN+SDSA Sbjct: 553 PNAPK-SISAFMFFSQTERENVKKDNPGIAFTDVGKVLGDRCNKCQLRKKHLLKQRLVADKKRYTDEISNYKNPQPMNVDSGNDSDSA 639
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSRP1_MAIZE (FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22 Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = -1 Query: 150 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESD 407 PNAPKRAM+ F++FS ER N+K SNP + T++ + LGE W+KMS EE++PY +A+ DKKRY+ E + Y+ VD+DSGNESD Sbjct: 554 PNAPKRAMTPFMYFSMAERGNMKSSNPDLPTTEIAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYEKESAVYRGEATVDVDSGNESD 639
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSP1B_ORYSJ (FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica GN=SSRP1-B PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21 Identity = 43/86 (50.00%), Postives = 65/86 (75.58%), Query Frame = -1 Query: 150 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDSGNESD 407 PNAPKRA++ F++FS+ ER N+K SNP +A T++ + LGERW+KM+ EE++PY +++ DKKRY +E + Y+ +D+DSG SD Sbjct: 555 PNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAAYRGAAAMDVDSGPASD 640
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: NHP6_NEUCR (Non-histone chromosomal protein 6 OS=Neurospora crassa GN=nhp-6 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20 Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = -1 Query: 195 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 407 PNAPKR +S ++FF+ +REN+++ NPG++F VG++LGERWK +S ++R PYE+KA ADKKRY+DE Y Sbjct: 23 PNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAY 93
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: NHP6_GIBZE (Non-histone chromosomal protein 6 OS=Gibberella zeae GN=NHP6 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19 Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = -1 Query: 195 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 407 PNAPKR +S ++FF+ +REN+++ NPGI+F VG++LGERWK ++ ++R PYE+KA ADKKRY+DE Y Sbjct: 21 PNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAY 91
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: NHP6_EMENI (Non-histone chromosomal protein 6 OS=Emericella nidulans GN=nhp6 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19 Identity = 40/72 (55.56%), Postives = 57/72 (79.17%), Query Frame = -1 Query: 192 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 407 PNAPKR +S ++FF+ R+ +++ NPGI+F VG++LGE+WK +S +ER+PYE KA ADKKRY+DE + YK Sbjct: 24 PNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYK 95
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: NHP6_ASPFU (Non-histone chromosomal protein 6 OS=Aspergillus fumigatus GN=nhp6 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19 Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = -1 Query: 174 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVD 407 PNAPKR +S ++FF+ R+ +++ NPGI+F VG++LGERWK +S ER PYE KA ADKKRY+DE + Y + D Sbjct: 22 PNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAADKKRYEDEKASYNAAQDED 99
BLAST of DC887464 vs. ExPASy Swiss-Prot
Match: SSP1A_ORYSJ (FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19 Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = -1 Query: 150 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPVDIDS---GNESD 407 PNAPKRAM+ F++FS ER N+K +NP + T++ + LGE W+KM+ EE++PY +++ DKKRY+ E + Y+ +D+DS GNESD Sbjct: 553 PNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYRGAAAMDVDSGSGGNESD 641 The following BLAST results are available for this feature:
BLAST of DC887464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DC887464 ID=DC887464; Name=DC887464; organism=Citrus sinensis; type=EST; length=731bpback to top |