DC887462 | Citrus Genome Database

Overview


Name	DC887462
Unique Name	DC887462
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	627

Libraries


Library Name	Type
EIC	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig5604	contig	Csv1_Contig5604:1..625.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD1_CITUN (Defender against cell death 1 OS=Citrus unshiu GN=DAD1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.575e-54
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = -1

Query:  247 FTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 477
            FT++IQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   39 FTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 115

HSP 2 Score: 78.9518 bits (193), Expect = 7.575e-54
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  476 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVF 592
            MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVF
Sbjct:    1 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVF 39

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD1_BETVE (Defender against cell death 1 OS=Betula verrucosa GN=DAD1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.765e-47
Identity = 70/77 (90.91%), Postives = 76/77 (98.70%), Query Frame = -1

Query:  247 FTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 477
            FT++IQVVYMAIVGSFPFN+FLSG+LSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:   39 FTALIQVVYMAIVGSFPFNAFLSGLLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIMNFLG 115

HSP 2 Score: 64.3142 bits (155), Expect = 2.765e-47
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = -3

Query:  476 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVF 592
            MARST KDAQAL  SLRSAYAATP+ LKIIDLYV FAVF
Sbjct:    1 MARSTSKDAQALIQSLRSAYAATPSNLKIIDLYVVFAVF 39

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD1_SOLLC (Defender against cell death 1 OS=Solanum lycopersicum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.604e-47
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = -1

Query:  247 TSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 474
            T++IQVVYMAIVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   41 TALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 116

HSP 2 Score: 60.8474 bits (146), Expect = 3.604e-47
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = -3

Query:  479 MARSTG-KDAQALFHSLRSAYAATPTTLKIIDLYVGFAV 592
            MA+S+  KDAQALFHSLRSAYAATPT LKIIDLYV FA+
Sbjct:    1 MAKSSATKDAQALFHSLRSAYAATPTNLKIIDLYVIFAI 39

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD1_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Arabidopsis thaliana GN=DAD1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.356e-46
Identity = 70/77 (90.91%), Postives = 76/77 (98.70%), Query Frame = -1

Query:  247 FTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 477
            FT++IQVVYMA+VGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:   39 FTALIQVVYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115

HSP 2 Score: 62.003 bits (149), Expect = 1.356e-46
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -3

Query:  476 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVF 592
            M +ST KDAQ LF SLRSAY+ATPT LKIIDLYV FAVF
Sbjct:    1 MVKSTSKDAQDLFRSLRSAYSATPTNLKIIDLYVVFAVF 39

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD2_ARATH (Defender against cell death 2 OS=Arabidopsis thaliana GN=DAD2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.303e-46
Identity = 69/77 (89.61%), Postives = 75/77 (97.40%), Query Frame = -1

Query:  247 FTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 477
            FT++IQV YMA+VGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:   39 FTALIQVAYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115

HSP 2 Score: 62.7734 bits (151), Expect = 2.303e-46
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = -3

Query:  476 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVF 592
            M +ST KDAQ LFHSL SAY ATPT LKIIDLYV FAVF
Sbjct:    1 MVKSTSKDAQDLFHSLHSAYTATPTNLKIIDLYVCFAVF 39

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD1_MALDO (Defender against cell death 1 OS=Malus domestica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.123e-45
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = -1

Query:  247 TSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 474
            T++IQVVYMAIVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLH+VIMNFLG
Sbjct:   44 TALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHMVIMNFLG 119

HSP 2 Score: 59.6918 bits (143), Expect = 1.123e-45
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = -3

Query:  479 STGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAV 583
            ST +DA ALF SLRSAY+ATPTTLKIIDLY+GFAV
Sbjct:    8 STAQDAVALFDSLRSAYSATPTTLKIIDLYIGFAV 42

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD1_PEA (Defender against cell death 1 OS=Pisum sativum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 7.821e-44
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = -1

Query:  247 FTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 477
            FT+++Q VYMA+VG FPFNSFLSGVLSCVGTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:   41 FTALLQDVYMALVGPFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLGPERAFADFVLCNLVLHLVIMNFLG 117

HSP 2 Score: 56.6102 bits (135), Expect = 7.821e-44
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = -3

Query:  476 STGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVF 583
            ST KDAQ LFH++ SAY+ATPT LKIIDLYV FAVF
Sbjct:    6 STTKDAQDLFHAIWSAYSATPTNLKIIDLYVVFAVF 41

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD1_PICMA (Defender against cell death 1 OS=Picea mariana GN=DAD1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.328e-43
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = -1

Query:  247 VSRFFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 489
            V    T+V+QVVYMAIVGSFPFN+FLSGVLSC GTAVLAVCLR+QVNK+N+EFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   35 VYAILTAVVQVVYMAIVGSFPFNAFLSGVLSCTGTAVLAVCLRMQVNKENREFKDLPPERAFADFVLCNLVLHLVIMNFLG 115

HSP 2 Score: 52.373 bits (124), Expect = 1.328e-43
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = -3

Query:  479 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAV 592
            M  ST K+A AL  SLRSAY+ATPT LKIIDLYV +A+
Sbjct:    1 MGTSTAKEAHALIASLRSAYSATPTKLKIIDLYVVYAI 38

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSJ (Defender against cell death 1 OS=Oryza sativa subsp. japonica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.481e-43
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = -1

Query:  247 TSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 474
            T++IQVVYM IVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   39 TALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114

HSP 2 Score: 46.2098 bits (108), Expect = 8.481e-43
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = -3

Query:  479 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAV 592
            M R+T  DA+ L  SL  AYAATPT LKIIDLYV FAV
Sbjct:    1 MPRATS-DAKLLIQSLGKAYAATPTNLKIIDLYVVFAV 37

[Close]

BLAST of DC887462 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSI (Defender against cell death 1 OS=Oryza sativa subsp. indica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.481e-43
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = -1

Query:  247 TSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 474
            T++IQVVYM IVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   39 TALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114

HSP 2 Score: 46.2098 bits (108), Expect = 8.481e-43
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = -3

Query:  479 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAV 592
            M R+T  DA+ L  SL  AYAATPT LKIIDLYV FAV
Sbjct:    1 MPRATS-DAKLLIQSLGKAYAATPTNLKIIDLYVVFAV 37

The following BLAST results are available for this feature:

BLAST of DC887462 vs. ExPASy Swiss-Prot

BLAST of DC887462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
DAD1_CITUN	7.575e-54	97.40	Defender against cell death 1 OS=Citrus unshiu GN=...	[more]
DAD1_BETVE	2.765e-47	90.91	Defender against cell death 1 OS=Betula verrucosa ...	[more]
DAD1_SOLLC	3.604e-47	94.74	Defender against cell death 1 OS=Solanum lycopersi...	[more]
DAD1_ARATH	1.356e-46	90.91	Dolichyl-diphosphooligosaccharide--protein glycosy...	[more]
DAD2_ARATH	2.303e-46	89.61	Defender against cell death 2 OS=Arabidopsis thali...	[more]
DAD1_MALDO	1.123e-45	92.11	Defender against cell death 1 OS=Malus domestica G...	[more]
DAD1_PEA	7.821e-44	89.61	Defender against cell death 1 OS=Pisum sativum GN=...	[more]
DAD1_PICMA	1.328e-43	86.42	Defender against cell death 1 OS=Picea mariana GN=...	[more]
DAD1_ORYSJ	8.481e-43	94.74	Defender against cell death 1 OS=Oryza sativa subs...	[more]
DAD1_ORYSI	8.481e-43	94.74	Defender against cell death 1 OS=Oryza sativa subs...	[more]

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Properties


Property Name	Value
Genbank description	DC887462 EIC Citrus sinensis cDNA clone EIC0403 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC887462 ID=DC887462; Name=DC887462; organism=Citrus sinensis; type=EST; length=627bp
CCGTATCGGGAAACCGCAAGGTTTGTGGTAATTGTCAATCCGATACAGGC
AGCGAGAGACACAAAGTTCCTGGAATTGTAAATATAGAACTAAAAGGATC
CAAAAATGGTCCACATCTTCATTTATAGTAAGTTCACATCCTAAGAAAAA
TATCCGCATTAATGTCGTAACTAACTTTTACAGCTAGGTCACACTGTCAT
CGACCAAGAAAAATTGTATTTTAAGTTGACGCAGGGTCAAGGTTTATCCA
AGGAAATTCATGATCACCAAATGCAGCACCAAATTGCAGAGAACAAAGTC
TGCAAAAGCTCGCTCTGGTGGTAGGTCCTTAAATTCCTTGTTGTCCTTGT
TCACTTGAATACGTAGACAAACAGCAAGGACTGCCGTCCCAACACAAGAA
AGTACTCCTGAAAGAAAAGAGTTGAATGGGAAGGATCCAACAATAGCCAT
GTAAACTACCTGAATTACGGAAGTAAAAAACCGCGAAACCCACATACAGA
TCGATGATCTTAAGAGTCGTGGGAGTGGCAGCATAAGCAGAGCGAAGGGA
ATGGAAAAGGGCTTGAGCGTCTTTGCCGGTCGATCTCGCCATTTCCTCTC
TGTAATCTGTCTTTCTCTCTGATGAAC