DC887457 | Citrus Genome Database

Overview


Name	DC887457
Unique Name	DC887457
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	581

Libraries


Library Name	Type
EIC	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13776	contig	Csv1_Contig13776:363..942.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8_DROME (ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 8.327e-41
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = -2

Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            D+GGQPRFRSMWERYCR V+AIVY+VDAAD D L  SR+ELH LL+KP L+GIP+LVLGNK D PGAL +  L + M L SI DRE+CC+ ISCK   NID  + WL++HSKS+S
Sbjct:   71 DIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKDNIDITLQWLIQHSKSQS 185

HSP 2 Score: 21.1718 bits (43), Expect = 8.327e-41
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            T+GNV IK+W
Sbjct:   61 TRGNVTIKVW 70

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.414e-40
Identity = 72/114 (63.16%), Postives = 92/114 (80.70%), Query Frame = -2

Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRFRSMWERYCR VSAIVY+VDAAD + +  S++ELH+LL+KP L GIP+LVLGNK D PGAL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184

HSP 2 Score: 23.483 bits (49), Expect = 1.414e-40
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            TKGNV IKLW
Sbjct:   61 TKGNVTIKLW 70

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.414e-40
Identity = 72/114 (63.16%), Postives = 92/114 (80.70%), Query Frame = -2

Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRFRSMWERYCR VSAIVY+VDAAD + +  S++ELH+LL+KP L GIP+LVLGNK D PGAL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184

HSP 2 Score: 23.483 bits (49), Expect = 1.414e-40
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            TKGNV IKLW
Sbjct:   61 TKGNVTIKLW 70

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8A_XENTR (ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.916e-40
Identity = 72/114 (63.16%), Postives = 90/114 (78.95%), Query Frame = -2

Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRFRSMWERYCR VSAIVY+VDAAD D +  S++ELH+LL+K  L GIP+LVLGNK D PGAL ++ L + M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQDKIEASKNELHNLLDKAQLQGIPVLVLGNKRDIPGALDEKELIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184

HSP 2 Score: 23.483 bits (49), Expect = 6.916e-40
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            TKGNV IKLW
Sbjct:   61 TKGNVTIKLW 70

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.174e-39
Identity = 71/114 (62.28%), Postives = 91/114 (79.82%), Query Frame = -2

Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRFRSMWERYCR VSAIVY+VDAAD + +  S++ELH+LL+KP L GIP+LVLGNK D  GAL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184

HSP 2 Score: 23.483 bits (49), Expect = 1.174e-39
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            TKGNV IKLW
Sbjct:   61 TKGNVTIKLW 70

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.993e-39
Identity = 70/114 (61.40%), Postives = 91/114 (79.82%), Query Frame = -2

Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRFRSMWERYCR V+AIVY++DAAD + +  SR+ELH+LL+KP L GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184

HSP 2 Score: 22.7126 bits (47), Expect = 1.993e-39
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            TKGNV IK+W
Sbjct:   61 TKGNVTIKIW 70

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.993e-39
Identity = 70/114 (61.40%), Postives = 91/114 (79.82%), Query Frame = -2

Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRFRSMWERYCR V+AIVY++DAAD + +  SR+ELH+LL+KP L GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184

HSP 2 Score: 22.7126 bits (47), Expect = 1.993e-39
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            TKGNV IK+W
Sbjct:   61 TKGNVTIKIW 70

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.993e-39
Identity = 70/114 (61.40%), Postives = 91/114 (79.82%), Query Frame = -2

Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRFRSMWERYCR V+AIVY++DAAD + +  SR+ELH+LL+KP L GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184

HSP 2 Score: 22.7126 bits (47), Expect = 1.993e-39
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            TKGNV IK+W
Sbjct:   61 TKGNVTIKIW 70

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.597e-39
Identity = 71/114 (62.28%), Postives = 91/114 (79.82%), Query Frame = -2

Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRFRSMWERYCR V+AIVY+VDAAD + +  SR+ELH+LL+KP L GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184

HSP 2 Score: 22.7126 bits (47), Expect = 2.597e-39
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            TKGNV IK+W
Sbjct:   61 TKGNVTIKIW 70

[Close]

BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8B_BOVIN (ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.743e-39
Identity = 69/114 (60.53%), Postives = 91/114 (79.82%), Query Frame = -2

Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRF+SMWERYCR V+AIVY++DAAD + +  SR+ELH+LL+KP L GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184

HSP 2 Score: 22.7126 bits (47), Expect = 5.743e-39
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = -1

Query:  552 TKGNVPIKLW 581
            TKGNV IK+W
Sbjct:   61 TKGNVTIKIW 70

The following BLAST results are available for this feature:

BLAST of DC887457 vs. ExPASy Swiss-Prot

BLAST of DC887457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
ARL8_DROME	8.327e-41	66.09	ADP-ribosylation factor-like protein 8 OS=Drosophi...	[more]
ARL8A_HUMAN	1.414e-40	63.16	ADP-ribosylation factor-like protein 8A OS=Homo sa...	[more]
ARL8A_CHICK	1.414e-40	63.16	ADP-ribosylation factor-like protein 8A OS=Gallus ...	[more]
ARL8A_XENTR	6.916e-40	63.16	ADP-ribosylation factor-like protein 8A OS=Xenopus...	[more]
ARL8A_MOUSE	1.174e-39	62.28	ADP-ribosylation factor-like protein 8A OS=Mus mus...	[more]
ARL8B_RAT	1.993e-39	61.40	ADP-ribosylation factor-like protein 8B OS=Rattus ...	[more]
ARL8B_MOUSE	1.993e-39	61.40	ADP-ribosylation factor-like protein 8B OS=Mus mus...	[more]
ARL8B_HUMAN	1.993e-39	61.40	ADP-ribosylation factor-like protein 8B OS=Homo sa...	[more]
AR8BA_DANRE	2.597e-39	62.28	ADP-ribosylation factor-like protein 8B-A OS=Danio...	[more]
ARL8B_BOVIN	5.743e-39	60.53	ADP-ribosylation factor-like protein 8B OS=Bos tau...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC887457 EIC Citrus sinensis cDNA clone EIC0397 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC887457 ID=DC887457; Name=DC887457; organism=Citrus sinensis; type=EST; length=581bp
CCNAGCCATATTAGGATAAATTATCTAATATAATACACTACATGCAACTC
AGAACTCAGAAGGGAAAAAAATCATTAACAAACAGCAAAACAAGTTTGAA
TGATGAAAACTTCCATTAACACCCCAGAAATGCATCCTTCTGAAATTATA
TCACAGACATCCACAAAGAAAGAAGAAAAGGGATAAGTAAAAATAAGTCC
TCTCAGCTCTTTGACTTTGAATGTTTGACAAGCCAATCAATTACGGAGTC
AATGTTGGTCGAGTTCTTGCATGAGATCATAAAGCAGCAAACTTCTCTGT
CGGTGATGGATTTTAGTCCCATTTCATCAGTTAAAGCCTGTTTAGATAGA
GCTCCGGGTTTGTCAATCTTGTTCCCTAGCACCAGCAAAGGGATACCACT
AAGTGAGGGTTTGTTCAGCAAATCATGAAGTTCACTTCTTGAAATGCTCA
GGTTGTCAGGATCAGCAGCATCCACCACGTAAACAATAGCAGAAACTGCC
CGGCAATACCGCTCCCACATACTGCGGAATCTAGGTTGACCTCCAAGATC
CCCAAAGCTTAATTGGAACATTTCCTTTTGT