DC887456

Overview
NameDC887456
Unique NameDC887456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887456_ssr31 microsatellite DC887456_ssr31:31..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC887456 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 305.064 bits (780), Expect = 2.407e-82
Identity = 137/155 (88.39%), Postives = 147/155 (94.84%), Query Frame = -3
Query:  235 RYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWREDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELN 699
            RYVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHL LG+KTGLPYI+HSKASNPFVNLKKEY GIFW+E+IIPFFQA TLPKECTTVQ+CY+ELSKQVK+KLS +DPYF KL +AMVTWIEAWDELN
Sbjct:  188 RYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLGLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEIIPFFQAATLPKECTTVQQCYLELSKQVKKKLSSIDPYFTKLGEAMVTWIEAWDELN 342          
BLAST of DC887456 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.105e-82
Identity = 137/156 (87.82%), Postives = 148/156 (94.87%), Query Frame = -3
Query:  232 RYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWREDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 699
            RYVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL LGVKTGLPYI+HSKASNPFVNLKKEYKGI+W+E+IIPF Q+ TLPK+CT+VQ+CY+ELSKQVKEKLS +DPYF KLADAMVTWIEAWDELNP
Sbjct:  192 RYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEEIIPFSQSATLPKDCTSVQQCYLELSKQVKEKLSTIDPYFTKLADAMVTWIEAWDELNP 347          
BLAST of DC887456 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 5.928e-81
Identity = 137/156 (87.82%), Postives = 145/156 (92.95%), Query Frame = -3
Query:  232 RYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWREDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 699
            RYVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL+LGVKTGLPYI+HSKASNPFVNLKKEYKGIFW+EDIIPFFQ VT+PK+C TVQ+CYI LS QVKEKL  +DPYF KL DAMVTWIEAWDELNP
Sbjct:  198 RYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQNVTIPKDCDTVQKCYIYLSGQVKEKLGTIDPYFVKLGDAMVTWIEAWDELNP 353          
BLAST of DC887456 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.253e-79
Identity = 133/155 (85.81%), Postives = 145/155 (93.55%), Query Frame = -3
Query:  235 RYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWREDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELN 699
            R+VD VLTIPKG+LFPMCGMNLAF+R LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL  GVKTGLPYI+HSKASNPFVNLKKEYKGIFW+E+IIPFFQA TL K+CT+VQ+CYIELSKQVKEKL  +DPYF KLADAMVTW+EAWDE+N
Sbjct:  191 RFVDAVLTIPKGSLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGYGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQAATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFIKLADAMVTWVEAWDEIN 345          
The following BLAST results are available for this feature:
BLAST of DC887456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG1_SOLTU2.407e-8288.39Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG2_SOLTU4.105e-8287.82Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG_MAIZE5.928e-8187.82Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_PEA3.253e-7985.81Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
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Properties
Property NameValue
Genbank descriptionDC887456 EIC Citrus sinensis cDNA clone EIC0395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887456 ID=DC887456; Name=DC887456; organism=Citrus sinensis; type=EST; length=701bp
GTTTTATTCCTATAAGTTCAGAGCACGAAGTAAATAAATAAAATTACACT
GACCAATCTGTAAAATCCAAATGTCGGACCAAATTGGGTGCCAAAAAGTG
CATAAAACTTTGTAAAAATACAGCAGCTAATGACTATAAATTACTCCCTA
ACATGAAGGAAAATATTGTCGTCCCCAGTTAATCAAAAGTTTCTCTACTT
AGGCTTTGCCATTGGCCACTGCAGCTCCAGCTGGGTTAAGCTCATCCCAC
GCTTCAATCCAGGTCACCATGGCATCTGCCAACTTGTCGAAGTAGGGATC
TACTTTGCTAAGCTTTTCCTTGACCTGTTTCGACAGTTCAATGTAGCACT
CTTGCACAGTAGTGCACTCTTTTGGAAGTGTCACGGCTTGGAAGAATGGG
ATGATATCTTCCCGCCAGAAGATGCCCTTGTACTCTTTCTTTAGGTTCAC
AAACGGGTTGCTTGCTTTGCTGTGGAAGATATAAGGCAGACCAGTCTTTA
CTCCCAAATTCAAATGGTCACATATCACCTTGGTGCACCAGCCAGCCCAC
ATATCATCATAACGTCCAATTGGCTGACCGTCGCCCATGAGGCCAAAATA
CATTGCAGGGCCAATCAAGTGACGGTCAAATGCCAAATTCATACCACACA
TGGGGAAGAGAGTGCCCTTAGGAATGGTCAAAACCATATCCACATACCTA
G
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