DC887450

Overview
NameDC887450
Unique NameDC887450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887450 vs. ExPASy Swiss-Prot
Match: T112A_ARATH (TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 63/111 (56.76%), Postives = 73/111 (65.77%), Query Frame = -2
Query:  287 KGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYA-XXXXXXXXXXXXXXXDFLRKFXXXXXXXXXXXXXLVCPETGRKFPVNKGIPNMLLHEDEV 616
            KGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSMGYA                 FL+K              LVCPETGRKFPVNKGIPNMLLHEDEV
Sbjct:   14 KGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSMGYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV 124          
BLAST of DC887450 vs. ExPASy Swiss-Prot
Match: T112B_ARATH (TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.184e-24
Identity = 61/111 (54.95%), Postives = 68/111 (61.26%), Query Frame = -2
Query:  287 KGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYA-XXXXXXXXXXXXXXXDFLRKFXXXXXXXXXXXXXLVCPETGRKFPVNKGIPNMLLHEDEV 616
            KGV N FPL IE EKV  K+VDFNPDFL+ +F KI+W+ALV  +RSM Y                  FLRKF             LVCPETGRKF V+KGIPNMLLHEDEV
Sbjct:   14 KGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSMEYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIPNMLLHEDEV 124          
BLAST of DC887450 vs. ExPASy Swiss-Prot
Match: TR112_MOUSE (tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = -2
Query:  290 GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXDFLRKFXXXXXXXXXXXXXLVCPETGRKFPVNKGIPNMLLHEDE 601
            GFPL ++  +V    V+FNP+F+  + PK+EW ALVQA+ ++  A                FLRK              L CPE+GR FP+++GIPNMLL+++E
Sbjct:   20 GFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADTLNLA-EVPKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIPNMLLNDEE 122          
BLAST of DC887450 vs. ExPASy Swiss-Prot
Match: TR112_DROME (TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 40/110 (36.36%), Postives = 55/110 (50.00%), Query Frame = -2
Query:  287 KGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXDFLRKFXXXXXXXXXXXXXLVCPETGRKFPVNKGIPNMLLHEDEV 616
            KGV  GFPL + + K    + +FNP F++ I PK++W A+  A++                      L+K              L CPETGR FP++ GIPNMLL+EDEV
Sbjct:   15 KGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLECPETGRVFPISDGIPNMLLNEDEV 124          
BLAST of DC887450 vs. ExPASy Swiss-Prot
Match: TR112_BOVIN (tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  290 GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXDFLRKFXXXXXXXXXXXXXLVCPETGRKFPVNKGIPNMLLHEDE 601
            GFPL ++  +V    V+FNPDF+  + PK+EW AL++A+  + +                +FLRK              L CPE+GR FP+++GIPNMLL ++E
Sbjct:   20 GFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADHL-HLIQVPKEPIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPESGRVFPISRGIPNMLLSDEE 122          
BLAST of DC887450 vs. ExPASy Swiss-Prot
Match: TR112_HUMAN (tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = -2
Query:  290 ANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXDFLRKFXXXXXXXXXXXXXLVCPETGRKFPVNKGIPNMLLHEDE 607
            + GFPL ++  +V    V+FNP+F+  + PK+EW A ++A+ ++                   FLR               L CPE+GR FP+++GIPNMLL E+E
Sbjct:   18 SRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADNLRLIQVPKGPVEGYEENEE-FLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSEEE 122          
The following BLAST results are available for this feature:
BLAST of DC887450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
T112A_ARATH6.543e-2756.76TRM112-like protein At1g22270 OS=Arabidopsis thali... [more]
T112B_ARATH5.184e-2454.95TRM112-like protein At1g78190 OS=Arabidopsis thali... [more]
TR112_MOUSE1.848e-1338.46tRNA methyltransferase 112 homolog OS=Mus musculus... [more]
TR112_DROME9.172e-1336.36TRM112-like protein OS=Drosophila melanogaster GN=... [more]
TR112_BOVIN2.043e-1236.54tRNA methyltransferase 112 homolog OS=Bos taurus G... [more]
TR112_HUMAN8.585e-1133.96tRNA methyltransferase 112 homolog OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionDC887450 EIC Citrus sinensis cDNA clone EIC0389 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887450 ID=DC887450; Name=DC887450; organism=Citrus sinensis; type=EST; length=617bp
TGATTGCCGTTGCTTGAGAGATTCTGGATATGCAAAATCAAAAAGATAGA
TACGGTTGTACCATGCTTGAATTAAGATCAAGGTACAGGGAACAAAAAAT
TCAACGATTAAAATCATCTCTTCAAAACCAGAATGCATCAAATTAAAACC
GCTCATTGCATTTCATAATTGAGAAAGCATCACATGGTCATTATCACAAT
CAAACAAACAGTTTCTTCTATTCAGTAAAACCCAAAACCCTAACCCTAAT
TCTCAACTGCAATAAACAGAAAACCCAACAAAATCAGACCTCATCTTCAT
GGAGCAGCATATTAGGAATCCCCTTATTAACCGGAAACTTTCTCCCTGTC
TCAGGACAAACCAGAGCACCCTCTTCCAGATGCAGCTCCAGGAGCGCATG
GTGGAACTTCCTCAAAAAATCGTCCGAGTCAAGCATCGACGATTCGGGCG
ACTCCTCGGGGAGCTCAGCGTAGCCCATGGACCGCGACGCCTGGACAAGC
GCCTGCCACTCGATCTTCGGGAATATATTTTTTAGAAAATCGGGGTTGAA
ATCCACCTGCTTTTCGATGACTTTCTCCACCTCGATCAGGAGAGGGAAGC
CGTTGGCGACTCCCTTG
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