DC887443

Overview
NameDC887443
Unique NameDC887443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887443_ssr480 microsatellite DC887443_ssr480:480..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2145 contig Csv1_Contig2145:31..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887443 vs. ExPASy Swiss-Prot
Match: NO93_SOYBN (Early nodulin-93 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = -1 
Query:  157 NSPLIASPAEDLKAKAA--NDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 426
            NSPL       L  K A    C  EGV AG KAA V  V +A+PTL +VR +PWA+ANLN+T QALIIS  + A+YFI  DKT+L  AR+N+
Sbjct:    5 NSPLERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTATAAAYFIVADKTVLATARKNS 96
The following BLAST results are available for this feature:
BLAST of DC887443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NO93_SOYBN1.990e-1853.26Early nodulin-93 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionDC887443 EIC Citrus sinensis cDNA clone EIC0380 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887443 ID=DC887443; Name=DC887443; organism=Citrus sinensis; type=EST; length=627bp
CGAGAATTCNTCGGTTGCTCAAGTGGGGAAAAAAATTGTCTCAAATACAT
TTAAATATTCTCATATGAACCTGCGTGCTATGCTCACTACGCATATCATG
GCATCTTCATGGTGAATTGCTTCAGGTACAGAATCTCAAGTTGGTTTGCC
ATACTGGGCATTCCTCCTTGCACACTCCAAAATAGTCTTGTCAACAGTGA
TGAAGTAAGAAGCAATTGACACTGCGGATATGATGAGTGCCTGACCAGTA
TAATTCAGGTTTGCCTTTGCCCAAGGAATTTTTCGAACTGCAACCAACGT
AGGCACAGCGGTGACAACACACATTACGGCAGCGGCCTTTAATCCAGCTC
GAACGCCTTCTTGAACGCAGTCGTTGGCGGCCTTAGCCTTTAGATCTTCA
GCAGGAGAGGCAATCAGTGGCGAGTTATTTGACCTTCTGGATGCAAAAAT
ATCTCTAACTTCCGACGGAAATCCCATTCCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTAATTAGAATAAGAAACTCAAAAATGGATGGCGGATTAA
GATTTGAGGAGGACAGTGCATTGCAGTGTTCGTTTCGATTTTGATCTCTT
TTTATGTGCTTTTGAATCTTGAATCCC
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