DC887426

Overview
NameDC887426
Unique NameDC887426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5544 contig Csv1_Contig5544:127..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.297e-31
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = -1
Query:  126 TDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 398
            TD+DG+I+L EF T+CR+SS AA   E+R+AFDLYDQDKNGLISA EL+ VLNRLG+ CSV+ C  MI PVDADGDGNVNFEEF+ MMT+S
Sbjct:   69 TDRDGYINLDEFSTLCRSSSSAA---EIRDAFDLYDQDKNGLISASELHQVLNRLGMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMMTSS 156          
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: CML26_ARATH (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana GN=CML26 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.366e-27
Identity = 59/89 (66.29%), Postives = 71/89 (79.78%), Query Frame = -1
Query:  129 DKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 395
            D DGFI+  EF TICR+SS A    E+REAFDLYDQ+KNGLIS+ E++ VLNRLG+ CSV+ CV MI  VD DGDGNVNFEEF+ MM++
Sbjct:   67 DCDGFINQEEFATICRSSSSAV---EIREAFDLYDQNKNGLISSSEIHKVLNRLGMTCSVEDCVRMIGHVDTDGDGNVNFEEFQKMMSS 152          
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: ALL8_OLEEU (Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.589e-21
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = -1
Query:  132 TDKDGFISLSEFETICRTSS----GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 398
            TDKDGFI++ EF    +  +     + GE EL+EAF+LYDQD NGLIS+ EL+ +L RLG + +   CV MIK VD+DGDG V+FEEF+ MMT
Sbjct:   66 TDKDGFINVQEFAAFVKAETDPYPSSGGENELKEAFELYDQDHNGLISSVELHKILTRLGERYAEHDCVEMIKSVDSDGDGYVSFEEFKKMMT 158          
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 54/101 (53.47%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  135 TDKDGFISLSEFETI-CRTSSG------------AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 398
            +D+DGF+ LSEF    C  +              AA EAELREAF +YD D NG ISA EL+ VL +LG KCSV  C  MI+ VDADGDG VNF+EF+ MM
Sbjct:   51 SDRDGFVDLSEFAAFHCGPTPAHGGKGGDAKDQEAASEAELREAFRMYDADSNGKISARELHRVLRQLGDKCSVADCSRMIRSVDADGDGCVNFDEFKKMM 151          
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.645e-18
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  135 DKDGFISLSEFETICRTSSGAAGEA---ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 395
            D +GFI L EF  + + S  ++  +   +L+EAFDLYD D+NG ISA EL+ V+  LG KCS+  C  MI  VD+DGDG V+FEEF+ MM
Sbjct:   62 DGNGFIDLDEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCVDFEEFKKMM 151          
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: CML24_ARATH (Calcium-binding protein CML24 OS=Arabidopsis thaliana GN=CML24 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.148e-18
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = -1
Query:  132 DKDGFISLSEFETICRTSSGAAGE-----AELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 395
            D +GFI L EF  + +   G  G      ++L+EAF+LYD D NG ISA+EL+ V+  LG KCSV  C  MI  VD DGDG VNF+EF+ MM+
Sbjct:   64 DGNGFIDLDEFVALFQIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKNLGEKCSVQDCKKMISKVDIDGDGCVNFDEFKKMMS 156          
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: CML16_ORYSJ (Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica GN=CML16 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.786e-18
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  135 TDKDGFISLSEFETICRTSSG-AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 398
            TD+DGF+ L EF        G A  EAELR AFD+YD D +G I+A EL  VL R+G  CS + C  MI  VD DGDG V FEEF+ MM
Sbjct:   77 TDRDGFVDLGEFAAFHGRGRGDAEHEAELRAAFDVYDVDGDGRITAAELGKVLGRIGEGCSAEECERMIASVDVDGDGCVGFEEFKKMM 165          
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.179e-16
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  135 DKDGFISLSEFETICRTSSG--AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 395
            D DGFISL EF  +  T+SG  AA E +LR AF ++D D NG ISA EL  VL+ LG K +V  C  MI+ VD +GDG ++FEEF+ MM
Sbjct:   87 DGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEFKVMM 175          
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: CML31_ARATH (Probable calcium-binding protein CML31 OS=Arabidopsis thaliana GN=CML31 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.978e-16
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = -1
Query:  126 DKDGFISLSEFETICRTSSGAAGEAE----LREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 395
            D DG I   EF +    + G   + E    ++EAFDLYD D +G ISA E+++VL RLG K +++ CV M++ VD D DG VNFEEF+ MM ++
Sbjct:   47 DGDGQIDDVEFASCLMVNGGGEKDTEEEVVMKEAFDLYDMDGDGKISASEIHVVLKRLGEKHTMEDCVVMVQTVDKDSDGFVNFEEFKIMMNSN 140          
BLAST of DC887426 vs. ExPASy Swiss-Prot
Match: CML32_ARATH (Probable calcium-binding protein CML32 OS=Arabidopsis thaliana GN=CML32 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.702e-15
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = -1
Query:  120 DKDGFISLSEFETICRTSSGAAGEAE---LREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLK 395
            D D  I ++E+ +          E E   ++EAFDLYD D +G ISA E+++VL RLG K ++  C+AM++ VDADGDG V+FEEF++MM+ + K
Sbjct:   49 DGDNQIDVAEYASCLMLGGEGNKEDEDIVMKEAFDLYDIDGDGKISASEIHVVLKRLGEKQTIAECIAMVRAVDADGDGFVSFEEFKTMMSCNNK 143          
The following BLAST results are available for this feature:
BLAST of DC887426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
CML27_ARATH1.297e-3171.43Probable calcium-binding protein CML27 OS=Arabidop... [more]
CML26_ARATH7.366e-2766.29Probable calcium-binding protein CML26 OS=Arabidop... [more]
ALL8_OLEEU1.589e-2154.84Calcium-binding allergen Ole e 8 OS=Olea europaea ... [more]
CML18_ORYSJ2.997e-2053.47Probable calcium-binding protein CML18 OS=Oryza sa... [more]
CML23_ARATH1.645e-1851.11Probable calcium-binding protein CML23 OS=Arabidop... [more]
CML24_ARATH2.148e-1850.54Calcium-binding protein CML24 OS=Arabidopsis thali... [more]
CML16_ORYSJ4.786e-1853.93Probable calcium-binding protein CML16 OS=Oryza sa... [more]
CML10_ORYSJ1.179e-1653.93Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CML31_ARATH9.978e-1645.74Probable calcium-binding protein CML31 OS=Arabidop... [more]
CML32_ARATH1.702e-1545.26Probable calcium-binding protein CML32 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionDC887426 EIC Citrus sinensis cDNA clone EIC0356 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887426 ID=DC887426; Name=DC887426; organism=Citrus sinensis; type=EST; length=398bp
AGTAGTAGACNCAAGTAGGCACGGAGGAAAACGACAGCCTATAAACGGAC
GCAAGTTGATATCGGTACGGCCGACCATCGAATCACCGTCGAAACCAAAA
TCTACGGCGCAGGACCAGGTTTAAGAGAAGTAGTCATCATCGAACGAAAC
TCTTCAAAATTCACATTGCCATCACCATCGGCATCCACCGGCTTAATCAT
CGCCACACATCCATCAACCGAGCACTTAATTCCGAGCCTGTTCAACACCA
AATTCAACTCCTCCGCCGAAATCAAACCGTTCTTGTCCTGATCGTAGAGA
TCAAACGCCTCGCGGAGCTCGGCCTCGCCGGCGGCACCAGAGGAGGTCCG
GCAGATCGTTTCGAACTCCGACAGGCTGATGAATCCGTCCTTGTCGGT
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