FC921900

Overview
NameFC921900
Unique NameFC921900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length170
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921900 vs. ExPASy Swiss-Prot
Match: BCAT2_ARATH (Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.908e-16
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    2 LHSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDYGFQVEE 169
            L SV KK LEE SSCN+F++KG  ISTPAT+GTIL GITRKS++EIASD G+QV E
Sbjct:  261 LDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVE 316          
BLAST of FC921900 vs. ExPASy Swiss-Prot
Match: BCAT7_ARATH (Putative branched-chain-amino-acid aminotransferase 7 OS=Arabidopsis thaliana GN=BCAT7 PE=5 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.716e-16
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    2 LHSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDYGFQVEE 169
            L +   KN+EEVS+CNIFILKGNI+STP TSGTIL GITRKSI E+A D G++V+E
Sbjct:  228 LDAATGKNIEEVSTCNIFILKGNIVSTPPTSGTILPGITRKSICELARDIGYEVQE 283          
BLAST of FC921900 vs. ExPASy Swiss-Prot
Match: BCAT6_ARATH (Branched-chain-amino-acid aminotransferase 6 OS=Arabidopsis thaliana GN=BCAT6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.532e-15
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    2 LHSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDYGFQVEE 169
            L +   +N+EE+++CNIFI+KGNI+STP TSGTIL G+TRKSI E+A D G+QVEE
Sbjct:  225 LDAATGRNIEELTACNIFIVKGNIVSTPPTSGTILPGVTRKSISELAHDIGYQVEE 280          
BLAST of FC921900 vs. ExPASy Swiss-Prot
Match: BCAT1_ARATH (Branched-chain-amino-acid aminotransferase 1, mitochondrial OS=Arabidopsis thaliana GN=BCAT1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.901e-14
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:   20 KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDYGFQVEE 169
            KN+EEVS+ NIF++KGN I TPATSGTIL GITRKSIIEIA D G++VEE
Sbjct:  263 KNIEEVSAANIFLVKGNTIVTPATSGTILGGITRKSIIEIALDLGYKVEE 312          
BLAST of FC921900 vs. ExPASy Swiss-Prot
Match: BCAT5_ARATH (Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.242e-14
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 2
Query:    2 LHSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDYGFQVEE 169
            L  ++K+ LEEVSSCNIFI+K N+ISTP   GTIL GITRKSIIE+A   GF+VEE
Sbjct:  287 LDCLHKRYLEEVSSCNIFIVKDNVISTPEIKGTILPGITRKSIIEVARSQGFKVEE 342          
BLAST of FC921900 vs. ExPASy Swiss-Prot
Match: BCAT3_ARATH (Branched-chain-amino-acid aminotransferase 3, chloroplastic OS=Arabidopsis thaliana GN=BCAT3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.432e-14
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 2
Query:    2 LHSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDYGFQVEE 169
            L  + K+ LEEVSSCNIFI+K N+ISTP   GTIL GITRKS+I++A   GFQVEE
Sbjct:  285 LDCIYKRYLEEVSSCNIFIVKDNVISTPEIKGTILPGITRKSMIDVARTQGFQVEE 340          
BLAST of FC921900 vs. ExPASy Swiss-Prot
Match: BCAT4_ARATH (Probable branched-chain-amino-acid aminotransferase 4 OS=Arabidopsis thaliana GN=BCAT4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.828e-12
Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 2
Query:    2 LHSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDYGFQVEE 169
            L +   KN+EE+ + N+F+LKGN++STP  +GTIL G+TR  ++E+  D+G+QVEE
Sbjct:  224 LDAATGKNIEELFAANVFMLKGNVVSTPTIAGTILPGVTRNCVMELCRDFGYQVEE 279          
The following BLAST results are available for this feature:
BLAST of FC921900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BCAT2_ARATH5.908e-1671.43Branched-chain-amino-acid aminotransferase 2, chlo... [more]
BCAT7_ARATH7.716e-1669.64Putative branched-chain-amino-acid aminotransferas... [more]
BCAT6_ARATH6.532e-1564.29Branched-chain-amino-acid aminotransferase 6 OS=Ar... [more]
BCAT1_ARATH1.901e-1476.00Branched-chain-amino-acid aminotransferase 1, mito... [more]
BCAT5_ARATH3.242e-1467.86Branched-chain-amino-acid aminotransferase 5, chlo... [more]
BCAT3_ARATH9.432e-1466.07Branched-chain-amino-acid aminotransferase 3, chlo... [more]
BCAT4_ARATH8.828e-1250.00Probable branched-chain-amino-acid aminotransferas... [more]
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Properties
Property NameValue
Genbank descriptionC06053F11T7 RindPdigS Citrus sinensis cDNA clone C06053F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921900 ID=FC921900; Name=FC921900; organism=Citrus sinensis; type=EST; length=170bp
CCTACACTCAGTGAATAAGAAAAATCTTGAGGAAGTATCTTCGTGTAATA
TTTTCATTTTAAAGGGCAATATTATTTCCACTCCTGCTACAAGTGGAACC
ATTCTTGCAGGGATTACTAGGAAAAGCATAATTGAAATTGCTTCTGATTA
TGGTTTCCAGGTCGAGGAAC
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