DC887411

Overview
NameDC887411
Unique NameDC887411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DC887411 vs. ExPASy Swiss-Prot
Match: ICE1_ARATH (Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.343e-48
Identity = 94/127 (74.02%), Postives = 108/127 (85.04%), Query Frame = -3 
Query:  277 ESTPTGSLMQPSTSIQPMTPTPPTLPCRVKEEISRS----PTGEAARVEVRIREGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 645
            ESTP GSL   S+S  P+TPTP TL CRVKEE+  S    P G+ ARVEVR+REGRAVNIHMFC RRPGLLL+TM+ALD+LGLD+QQAVISCFNGFALDVFRAEQC+EGQ++LP QIK+VL DTAG+
Sbjct:  364 ESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQIKAVLFDTAGY 490
[Close]
BLAST of DC887411 vs. ExPASy Swiss-Prot
Match: SCRM2_ARATH (Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.113e-43
Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = -3 
Query:  277 ESTPTGSLMQPSTSIQPMTPTPPTLPCRVKEEISRS-----PTGEAARVEVRIREGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 645
            ESTP  S     +S+ P+TPTP TL  RVKEE+  S     P G+  RVEVR+REG+AVNIHMFC RRPGLLLSTMRALD+LGLD+QQAVISCFNGFALDVFRAEQC+E  DVLP+QIK+VLLDTAG+
Sbjct:  324 ESTPPSS-----SSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDVLPEQIKAVLLDTAGY 446
The following BLAST results are available for this feature:
BLAST of DC887411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ICE1_ARATH3.343e-4874.02Transcription factor ICE1 OS=Arabidopsis thaliana ... [more]
SCRM2_ARATH1.113e-4371.09Transcription factor SCREAM2 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionDC887411 EIC Citrus sinensis cDNA clone EIC0334 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887411 ID=DC887411; Name=DC887411; organism=Citrus sinensis; type=EST; length=647bp
CTGAAATTACAAAAGAACAACACTTGAGTTTCTGTGCTTTCTGAGGCATG
ACTAAGAACACAACTGTGAAAGATGCTTACCCAAACTACCAATTCTCCAA
ACATATGATGACTGATGACCTACAAGCATCAGTCTGGTCTTGTTCGTACC
TCTACAAAATGAAAATGAGAACCGAATTTCATTTACATACTACTTGAGGT
ACAGAAGAACTACAGTTAGTTTCTTCACTCACAAGGTGGTTGAATGTACA
GCTATTCGATTTTACATCACATCATGGAAGCCAGCTGTATCCAAGAGCAC
CGATTTGATCTGCTTGGGCAAGACATCCTGGCCTTCCCTGCATTGCTCTG
CTCGGAAAACATCCAGTGCAAACCCATTGAAACAGCTGATGACAGCCTGC
TGAATGTCCAACCCAAGGCTGTCCAGAGCCCTCATAGTAGAGAGCAAGAG
ACCCGGCCTACGAGCGCAGAACATGTGAATGTTCACAGCCCTTCCTTCTC
TAATCCTAACTTCCACCCTTGCAGCTTCGCCTGTTGGACTCCGGCTTATT
TCTTCCTTGACGCGGCACGGAAGGGTGGGTGGAGTTGGGGTCATAGGTTG
GATGCTTGTAGAGGGCTGCATCAAAGAGCCAGTTGGGGTTGACTCCA
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