DC887408

Overview
NameDC887408
Unique NameDC887408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2594 contig Csv1_Contig2594:90..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.307e-43
Identity = 93/113 (82.30%), Postives = 96/113 (84.96%), Query Frame = -3
Query:  236 QKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 574
            QK+K +              LRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK+EMYFPMRKYAIKV
Sbjct:   11 QKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123          
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.637e-42
Identity = 92/113 (81.42%), Postives = 96/113 (84.96%), Query Frame = -3
Query:  236 QKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 574
            +KSK D              LRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:   11 EKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.792e-42
Identity = 92/112 (82.14%), Postives = 95/112 (84.82%), Query Frame = -3
Query:  236 KSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 571
            KSK D              LRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:   12 KSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123          
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 91/113 (80.53%), Postives = 95/113 (84.07%), Query Frame = -3
Query:  236 QKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 574
            +KSK D              LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:   11 EKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.265e-41
Identity = 90/112 (80.36%), Postives = 94/112 (83.93%), Query Frame = -3
Query:  236 KSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 571
            KSK D              LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK++MYFP+RKYAIKV
Sbjct:   12 KSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123          
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 4.623e-29
Identity = 62/91 (68.13%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  239 RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 511
            RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:   32 RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL35_MOUSE (60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.623e-29
Identity = 62/91 (68.13%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  239 RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 511
            RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:   32 RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL35_HUMAN (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.345e-28
Identity = 61/91 (67.03%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  239 RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 511
            RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:   32 RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL35_CHICK (60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.345e-28
Identity = 62/91 (68.13%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  239 RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 511
            RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYAIK
Sbjct:   32 RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYAIK 122          
BLAST of DC887408 vs. ExPASy Swiss-Prot
Match: RL35_BOVIN (60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.345e-28
Identity = 61/91 (67.03%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  239 RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 511
            RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:   32 RVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
The following BLAST results are available for this feature:
BLAST of DC887408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES4.307e-4382.3060S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL352_ARATH1.637e-4281.4260S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL354_ARATH2.792e-4282.1460S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL351_ARATH1.386e-4180.5360S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL353_ARATH5.265e-4180.3660S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_RAT4.623e-2968.1360S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_MOUSE4.623e-2968.1360S ribosomal protein L35 OS=Mus musculus GN=Rpl35... [more]
RL35_HUMAN1.345e-2867.0360S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
RL35_CHICK1.345e-2868.1360S ribosomal protein L35 OS=Gallus gallus GN=RPL3... [more]
RL35_BOVIN1.345e-2867.0360S ribosomal protein L35 OS=Bos taurus GN=RPL35 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887408 EIC Citrus sinensis cDNA clone EIC0330 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887408 ID=DC887408; Name=DC887408; organism=Citrus sinensis; type=EST; length=576bp
GATTTACCCTCGAATGTCGATAAATAAGAACACTCAAGAACAGAAATCCT
ATCTTGACTGCTATTCCATCACAATCTAGCACATCTTGTTTAGGTTGAGA
TGCACCCTTCAAGTTTTACACACATAAGATTGAACAAAAATGATATTTGA
AAAGGTAACAAAGTAAAAATTTGTCAACAAAATAGGTTCGTCACTGCAAG
ATACCAAGATACTCCTAGAAAAAGATTCTAGCCTACACCTTAATAGCGTA
CTTCCTCATGGGAAAGTACATCTCCCTCTTCTTCTCCCGCTCGGTCTTCA
GTGAAGCCTGGTGCTTGGTAAGCCTTCTCCTGATAGCCCGGGTCTTCTTG
GGACGCAGATCAAGGGGCAAGAACTTCTTATTCTTGTATGCCTCCCTCAA
TGCAGCCTTCTGCTTTTGTGAAATGACAGTCAACACTTGTGCGATCGACA
ACCTCACCACCTTGATCTTGGATAGCTTGTTAGGGGCACCGCCGGTGACC
TTAGCAACGCGAAGGAGGGCGAGCTCAGCCTTGAGTTCCTTCAACTGGTT
CAAAAGATCCACCTTCGATTTCTGCC
back to top