DC887396

Overview
NameDC887396
Unique NameDC887396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887396 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.118e-17
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = -2 
Query:  260 PICLTNVKDMAFGCGHQTCCECGQDLELCPFCRSTIQTRIKLY 388
            PICL+N KDMAFGCGHQTCCECG DL++CP CR+ IQTRIKLY
Sbjct:  426 PICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468
[Close]
BLAST of DC887396 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.945e-17
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -2 
Query:  260 ISFAPICLTNVKDMAFGCGHQTCCECGQDLELCPFCRSTIQTRIKLY 400
            I   PICL+N K+MAFGCGHQTCCECG DL++CP CR+ IQTRIKLY
Sbjct:  443 IQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489
The following BLAST results are available for this feature:
BLAST of DC887396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGLG2_ARATH3.118e-1781.40E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH6.945e-1774.47E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionDC887396 EIC Citrus sinensis cDNA clone EIC0314 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887396 ID=DC887396; Name=DC887396; organism=Citrus sinensis; type=EST; length=419bp
TTTCTTTTCNAGCTGTATACATAATTGCACAACTTCTACAGCAGCAAATA
ACATCCATCACGCATTAATCTATGTTAGAAAAAATTGCCCACAAAAAGAA
ACAAAAAATAATGTGACCAATAAGTTTACAATAATGTACAGCACCTAAAC
ACTTCCATTTCCTAGCATCCAAGATCATCTCAAGCTGAATTCAGCAAATC
TAACATCATTTTCATAACAAATGACAAAGAATTTTGGTCATTGTTGATGA
TGCAGATTAGTAGAGCTTAATTCGGGTCTGGATTGTGCTTCGACAAAAGG
GACATAATTCAAGGTCTTGTCCACATTCGCAACATGTCTGATGTCCGCAA
CCAAAGGCCATATCTTTCACATTAGTTAGGCAAATGGGAGCAAAGCTGAT
TTTCATTCGTTGAACTTGG
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