DC887390

Overview
NameDC887390
Unique NameDC887390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12982 contig Csv1_Contig12982:148..419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887390 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.867e-12
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = -2 
Query:  173 CGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 271
            CGN H +IRKYGL CCRQCFRSNAKEIGF+KYR
Sbjct:   24 CGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56
[Close]
BLAST of DC887390 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.158e-11
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = -2 
Query:  173 CGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 271
            CGN H +IRKYGLMCCRQCFRS+AK+IGF+KYR
Sbjct:   24 CGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56
The following BLAST results are available for this feature:
BLAST of DC887390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RS29_ARATH8.867e-1284.8540S ribosomal protein S29 OS=Arabidopsis thaliana ... [more]
RS29_WHEAT1.158e-1181.8240S ribosomal protein S29 OS=Triticum aestivum GN=... [more]
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Properties
Property NameValue
Genbank descriptionDC887390 EIC Citrus sinensis cDNA clone EIC0307 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887390 ID=DC887390; Name=DC887390; organism=Citrus sinensis; type=EST; length=272bp
CAATGATATTCTTAGTCCAACAATTGCTTTGTCAAACATTGAATCAATTT
AAGACAAAACATCGCTTAACAATCCTTGAGAAACAGAAATTCGCTACAGG
TATCACAGATAAACAAAATCAGCATGGTACTGGTAACCCCCCTTCTGATG
TTGACAACATGTTAATCATTTAGCGGTACTTAACAAAACCAATCTCCTTG
GCATTGCTACGGAAGCATTGTCTGCAGCACATGAGCCCATACTTCCTGAT
TATTGCATGAGGATTCCCACAA
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