DC887355

Overview
NameDC887355
Unique NameDC887355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5983 contig Csv1_Contig5983:20..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887355 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 2.776e-65
Identity = 121/166 (72.89%), Postives = 140/166 (84.34%), Query Frame = -3 
Query:  121 RTGFSAGKXXXXXXXXXXXXXXXIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP 618
            RT FSAGK               IQLAK V+GAS+VAAT+ST  LE ++SLGADLAIDYTK+N EDLP+K+DVV+DAIG CD+AVK IKEGG VVALTGAVTPPGFRFVVTSNG+VLKKLNPY+ESGKVKP++DPKGPFPFS+V +AFSY+ETN ATGKVV++PIP
Sbjct:  221 RTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIGMCDKAVKVIKEGGKVVALTGAVTPPGFRFVVTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFSRVADAFSYLETNHATGKVVVYPIP 386
The following BLAST results are available for this feature:
BLAST of DC887355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QORL_ARATH2.776e-6572.89Quinone oxidoreductase-like protein At1g23740, chl... [more]
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Properties
Property NameValue
Genbank descriptionDC887355 EIC Citrus sinensis cDNA clone EIC0256 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887355 ID=DC887355; Name=DC887355; organism=Citrus sinensis; type=EST; length=623bp
CTCCTTTTTATTAAGCTACTGCCCTCAATGAAAAAGACGAGAGTAGAAGA
TACAATACCTCATATCATTCTAATTGACAATTACAAATGACAAAACAGCC
TACCACTTTTTTCTTTGTCATGGAATTGGGTGTATAACAACTTTTCCAGT
AGCTTTGTTGGTTTCAATGTATGAGAAAGCCTCAACAACCTGGCTGAAGG
GGAATGGTCCCTTGGGGTCTATGATAGGCTTCACCTTTCCACTCTCTAGA
TATGGATTTAGTTTCTTCAAAACTTCTCCGTTTGAAGTGACAACAAATCT
GAAGCCAGGAGGTGTAACAGCGCCAGTTAGAGCTACCACGGTGCCCCCTT
CTTTGATGGCCTTTACTGCTCTATCACACTGCCCAATAGCATCGTAGACT
ACGTCAAATTTTTCTGGCAAATCTTCAAAGTTGTCTTTGGTGTAATCAAT
AGCCAAATCAGCACCCAAACTCTTCAAGAACTCCAAGTTCCTGGTACTCG
AAGTTGCTGCAACTCTTGAAGCACCAAATACTTGTTTCGCCAGCTGAATA
ACCAAGCTTCCAACACCACCAGAACCATTCAAAACAAGAATAGATTTACC
AGCAGAGAAACCAGTCCTTTCTA
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