DC887352

Overview
NameDC887352
Unique NameDC887352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9171 contig Csv1_Contig9171:56..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.138e-56
Identity = 112/143 (78.32%), Postives = 122/143 (85.31%), Query Frame = -2
Query:  253 YTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXIKPWSSNKGA 681
            YTVTG+RADE+TID+LIETG+SEQIFQKAIQEQGRGQ+MDTLAEIQERHDAVRDLE+KLL+LQQIFLDMAVLVDAQG+MLDNIESQVSSAVDHVQSGNTALQ+AK LQKNSRKWMC                 +KPW  NK A
Sbjct:  163 YTVTGERADEDTIDELIETGNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKWMCIAIIILLIVVAVIVVGVLKPW-KNKSA 304          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.639e-52
Identity = 104/143 (72.73%), Postives = 116/143 (81.12%), Query Frame = -2
Query:  253 YTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXIKPWSSNKGA 681
            +TVTG+RADEE ID+LIETGDSEQIFQKAI+EQGRGQIMDTLAEIQERHDAVRDLE+KLL+LQQ+FLDMAVLVDAQG+MLDNIE+ VSSAVDHVQSGN  L KA K QK+SRKWMC                 +KPW+   GA
Sbjct:  164 FTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLKPWTQKNGA 306          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 74/116 (63.79%), Postives = 95/116 (81.90%), Query Frame = -2
Query:  334 YTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 681
            +TVTG++ADEET+++LI +G+SE+  QKAIQEQGRGQ+MDTL+EIQERHD V+++ER LLEL Q+FLDMA LV+AQG+ML++IES VS A   V  G   L  AK LQ+N+RKW C
Sbjct:  165 FTVTGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNVSKASSFVMRGTDQLHGAKVLQRNNRKWAC 280          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 72/116 (62.07%), Postives = 94/116 (81.03%), Query Frame = -2
Query:  334 YTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 681
            +T+TG++ADE+TID LI +G+SE   QKAIQEQGRGQI+DT++EIQERHDAV+++E+ LLEL Q+FLDMA LV+AQG  L+NIES V+ A   V+ G   LQ A++ QK+SRKW C
Sbjct:  157 FTITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTC 272          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 73/142 (51.41%), Postives = 97/142 (68.31%), Query Frame = -2
Query:  256 YTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXIKPWSSNKG 681
            +TVTG+  DE T+D+LI TG+SE+  QKAIQEQGRG+++DT+ EIQERHDAV+D+E+ L EL Q+FLDMAVLV+ QG  LD+IES V  A   ++ G   LQ A+  QKN+RKW C                 +KPW+++ G
Sbjct:  173 FTVTGENPDERTLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTCIAIIILIIIITVVVLAVLKPWNNSSG 314          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.718e-35
Identity = 69/116 (59.48%), Postives = 94/116 (81.03%), Query Frame = -2
Query:  334 YTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 681
            +T+TG++ADE+TI+ LI +G+SE   QKAIQEQGRGQI+DT++EIQERHDAV+++E+ L+EL Q+FLDMA LV++QG  L++IES VS A   V+ G   LQ A++ QK+SRKW C
Sbjct:  162 FTITGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTC 277          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.529e-35
Identity = 76/142 (53.52%), Postives = 95/142 (66.90%), Query Frame = -2
Query:  256 YTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXIKPWSSNKG 681
            +TVTG+  DE T+++LI TG+SE   QKAIQEQGRG+I+DT+ EIQERHDAV+D+E+ L EL Q+FLDMAVLV+ QG  LD+IE  V  A   V+SG   L KA+  QKN+RKW C                 +KPW SN G
Sbjct:  172 FTVTGEYPDEATLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNVKRANSLVRSGADRLVKARFYQKNTRKWTCFAILLLLIIVVLIVVFTVKPWESNGG 313          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 55/117 (47.01%), Postives = 87/117 (74.36%), Query Frame = -2
Query:  334 YTVTGKRADEETIDQLI-ETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 681
            +TVTG+ A++E I+++I +    E+   +AIQE G+G++++T+ EIQ+R+DA +++E+ LLEL Q+FLDMAV+V++QG+ +D IE  V +A  +V  G   L+ AK  Q+NSRKWMC
Sbjct:  170 FTVTGEHANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAKSHQRNSRKWMC 286          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX1A_DROME (Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 41/111 (36.94%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  343 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 675
            +TG+  +++ +++++E G+S    Q  I E    Q   TLA+I+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  A+D+VQ+     +KA K Q  +R+
Sbjct:  158 ITGRPTNDDELEKMLEEGNSSVFTQGIIMETQ--QAKQTLADIEARHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSKARR 266          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX_APLCA (Syntaxin OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 41/111 (36.94%), Postives = 68/111 (61.26%), Query Frame = -2
Query:  343 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 675
            +TGK    E ++ +IE+G+     Q  I E    Q  +TLA+I+ RH+ +  LE  + +L  +F+DMA+LV++QG+M+D IE  V  AVD++++     +KA K Q  +R+
Sbjct:  157 ITGKTTTNEELEDMIESGNPAIFTQGIIMETQ--QANETLADIEARHNDIMKLETSIRDLHDMFMDMAMLVESQGEMIDRIEYNVEQAVDYIETAKMDTKKAVKYQSKARR 265          
The following BLAST results are available for this feature:
BLAST of DC887352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SY132_ARATH5.138e-5678.32Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY131_ARATH2.639e-5272.73Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY123_ARATH1.836e-3763.79Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY125_ARATH9.111e-3762.07Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY121_ARATH4.522e-3651.41Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY124_ARATH1.718e-3559.48Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY122_ARATH6.529e-3553.52Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY111_ARATH5.011e-2747.01Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
STX1A_DROME3.369e-1536.94Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE... [more]
STX_APLCA5.747e-1536.94Syntaxin OS=Aplysia californica PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887352 EIC Citrus sinensis cDNA clone EIC0250 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887352 ID=DC887352; Name=DC887352; organism=Citrus sinensis; type=EST; length=706bp
CATTTAAAAGCCAAACAAATTCAAATGTTACATAAAGTATGTCAAAGAAT
ATAGAAATATATACTTCAGTTAAAATCGCATGACACAGAGTTGACTTGAT
CAGAAAAGGGTGAGGGAGGGAAGGAAAGAGCTACAGGATTGGAATATGGA
ACTCAAATGACAGAAATTGGCGGGAAGGGTTAAAAAAAAGGAAAATGACC
ATTGACGGATTGACCAAAACACATATCTATACAAACAAATGTCGAGCAGC
TAAGCACCTTTGTTGCTACTCCATGGCTTGATTACCGCAACAACTATGAT
TGCAACAATGATGAGAAGGATGATGATGGCAATGCACATCCATTTCCTGG
AGTTCTTCTGTAGCTTTTTCGCCTTTTGGAGGGCAGTATTGCCTGACTGC
ACGTGATCTACAGCACTTGACACCTGAGATTCTATATTGTCCAGCATGTC
TCCCTGTGCATCTACCAACACCGCCATATCCAGAAAGATCTGTTGTAACT
CAAGAAGCTTCCTTTCCAAATCTCTAACGGCATCATGGCGTTCTTGAATT
TCAGCCAGAGTGTCCATTATCTGGCCTCGACCTTGTTCTTGGATTGCTTT
CTGGAATATCTGTTCACTGTCCCCGGTCTCAATCAATTGGTCAATTGTCT
CTTCATCAGCCCTTTTGCCGGTTACTGTATAAACTCGCCTCTCCACCACC
TCTCGA
back to top