DC887349

Overview
NameDC887349
Unique NameDC887349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig417 contig Csv1_Contig417:7..502. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of DC887349 vs. ExPASy Swiss-Prot
Match: TOM6_ARATH (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana GN=TOM6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = -3 
Query:  282 MFPGMFMKKPDKAAALKQLRSHVAMFGTWVVVIRVTPYLLHY 407
            MFPGMFM+KPDKA ALKQLR+HVA+FG+WVV+IR  PY+L Y
Sbjct:    1 MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSY 42
The following BLAST results are available for this feature:
BLAST of DC887349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TOM6_ARATH1.930e-1376.19Mitochondrial import receptor subunit TOM6 homolog... [more]
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Properties
Property NameValue
Genbank descriptionDC887349 EIC Citrus sinensis cDNA clone EIC0242 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887349 ID=DC887349; Name=DC887349; organism=Citrus sinensis; type=EST; length=496bp
CAAAAGTAAATTCAACAAGAATAATCATAGACCAGTTATTGCATTTTACG
AAAGTACCCACCCACGCTTCAAACTCAATAACAAGTTACAGGTATGTTAC
CCCTGCCAAATCCAGGGCATACATTAAAAACAATTATGACACTTCTAAAC
AGCGCGCCACTTTCTCTTCATCTTCATCTTACAGCTGCCGCACCACCAAA
CACAGAGAAAAAGACGGTTCAGCTAGAGAGAGAAAGAGAGAGTTAGAATT
CGAGCTTGAGCTCTTCTTTTTCTCTGGAGAAATAGTGAAGAAGGTAGGGG
GTGACGCGAATCACAACGACCCAGGTCCCGAACATGGCCACGTGGCTCCG
CAGCTGCTTCAAGGCCGCCGCCTTGTCTGGCTTCTTCATGAACATTCCCG
GAAACATCCTTGCTTCGGCTTAAACCCTAGCTTTGTGTTACTCTGTTGAT
CAGACGCTTCAATATGTTTTGTTGCTGTATCGAGCGAAGATTTATT
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