DC887346

Overview
NameDC887346
Unique NameDC887346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11486 contig Csv1_Contig11486:408..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3)

HSP 1 Score: 330.872 bits (847), Expect = 3.925e-90
Identity = 160/172 (93.02%), Postives = 165/172 (95.93%), Query Frame = -2
Query:  169 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 684
            TGNTNTLAGNV PKANLGDLRG AGGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG+ FASLYPGCIA+TGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVSDPSLTKSGVYWSWN  SASFENQLS+EASDVEKARKVWEISEKLVGLA
Sbjct:  230 TGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGVTFASLYPGCIASTGLFREHIPLFRALFPPFQKYITKGYVSETESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401          
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: PORA_ARATH (Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=2 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 5.126e-90
Identity = 160/172 (93.02%), Postives = 165/172 (95.93%), Query Frame = -2
Query:  169 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 684
            TGNTNTLAGNV PKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQVV+DPSLTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct:  234 TGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405          
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: POR_PEA (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.744e-90
Identity = 159/172 (92.44%), Postives = 164/172 (95.35%), Query Frame = -2
Query:  169 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 684
            TGNTNTLAGNV PKANLGDLRG AGGL GLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRR+HEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE+E+GKRLAQVVSDPSLTKSGVYWSWN  SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  228 TGNTNTLAGNVPPKANLGDLRGLAGGLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399          
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.744e-90
Identity = 158/172 (91.86%), Postives = 166/172 (96.51%), Query Frame = -2
Query:  169 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 684
            TGNTNTLAGNV PKANLGDLRG AGGLNG+NSS+MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVS+PSLTKSGVYWSWNKDSASFENQLS+EASDVEKARKVWE+SEKLVGLA
Sbjct:  227 TGNTNTLAGNVPPKANLGDLRGLAGGLNGMNSSAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEAESGKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398          
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: PORB_HORVU (Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.798e-88
Identity = 154/172 (89.53%), Postives = 165/172 (95.93%), Query Frame = -2
Query:  169 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 684
            TGNTNTLAGNV PKANLGDLRG A GLNG+ S++MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETG+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVS+PSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWE+SEKLVGLA
Sbjct:  224 TGNTNTLAGNVPPKANLGDLRGLAAGLNGVGSAAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395          
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: PORA_CUCSA (Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.798e-88
Identity = 157/172 (91.28%), Postives = 166/172 (96.51%), Query Frame = -2
Query:  169 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 684
            TGNTNTLAGNV PKANLGDLRG AGGLNGL SS MIDGG+FDGAKAYKDSKVCNMLTMQEFH+R+HEETGI FASLYPGCIATTGLFREHIPLFR+LFPPFQK+IT+GYVSEDEAGKRLAQVVS+PSLTKSGVYWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  228 TGNTNTLAGNVPPKANLGDLRGLAGGLNGLKSS-MIDGGEFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398          
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: PORB_ORYSJ (Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.305e-87
Identity = 152/172 (88.37%), Postives = 165/172 (95.93%), Query Frame = -2
Query:  169 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 684
            TGNTNTLAGNV PKANLGDLRG A GL+G++SS+MIDGG+FDGAKAYKDSKVCNMLTMQEFHRR+H ETG+ FASLYPGCIATTGLFREH+PLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSLTKSGVYWSWN +SASFENQLS+EASD EKA+KVWE+SEKLVGLA
Sbjct:  227 TGNTNTLAGNVPPKANLGDLRGLASGLDGVSSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHGETGVTFASLYPGCIATTGLFREHVPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNNNSASFENQLSEEASDPEKAKKVWELSEKLVGLA 398          
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: PORC_ARATH (Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.911e-85
Identity = 152/172 (88.37%), Postives = 162/172 (94.19%), Query Frame = -2
Query:  169 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 684
            TGNTNTLAGNV PKANLGDLRG A GLNG NSS MIDGG+FDGAKAYKDSKVCNMLTMQE HRR+HEETG+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSL KSGVYWSWN +S+SFENQLS+EASD EKA+K+WE+SEKLVGLA
Sbjct:  231 TGNTNTLAGNVPPKANLGDLRGLASGLNGQNSS-MIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEETGVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401          
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: PORA_ORYSJ (Protochlorophyllide reductase A, chloroplastic OS=Oryza sativa subsp. japonica GN=PORA PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.170e-84
Identity = 149/172 (86.63%), Postives = 160/172 (93.02%), Query Frame = -2
Query:  172 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 684
            TGNTNTLAGNV PKA LGDLRG AGGL G N S+MIDG + FDGAKAYKDSK+CNMLTMQEFHRRFHEETGI FASLYPGCIATTGLFREHIPLFRLLFPPFQ+++TKG+VSE E+GKRLAQVV DPSLTKSGVYWSWNKDSASFENQLSQEASD EKARK+W++SEKLVGL
Sbjct:  215 TGNTNTLAGNVPPKAGLGDLRGLAGGLRGQNGSAMIDGAESFDGAKAYKDSKICNMLTMQEFHRRFHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQRFVTKGFVSEAESGKRLAQVVGDPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKLWDLSEKLVGL 386          
BLAST of DC887346 vs. ExPASy Swiss-Prot
Match: PORA_WHEAT (Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.647e-83
Identity = 148/173 (85.55%), Postives = 163/173 (94.22%), Query Frame = -2
Query:  169 TGNTNTLAGNVXPKANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 684
            TGN+NTLAGNV PKA+LGDLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++PSLTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  216 TGNSNTLAGNVPPKASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388          
The following BLAST results are available for this feature:
BLAST of DC887346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PORB_ARATH3.925e-9093.02Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_ARATH5.126e-9093.02Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_PEA8.744e-9092.44Protochlorophyllide reductase, chloroplastic OS=Pi... [more]
POR_DAUCA8.744e-9091.86Protochlorophyllide reductase, chloroplastic OS=Da... [more]
PORB_HORVU4.798e-8889.53Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_CUCSA4.798e-8891.28Protochlorophyllide reductase, chloroplastic OS=Cu... [more]
PORB_ORYSJ5.305e-8788.37Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORC_ARATH2.911e-8588.37Protochlorophyllide reductase C, chloroplastic OS=... [more]
PORA_ORYSJ7.170e-8486.63Protochlorophyllide reductase A, chloroplastic OS=... [more]
PORA_WHEAT4.647e-8385.55Protochlorophyllide reductase A, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionDC887346 EIC Citrus sinensis cDNA clone EIC0239 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887346 ID=DC887346; Name=DC887346; organism=Citrus sinensis; type=EST; length=685bp
TTCACAAGCCATCTACATCTACAATTGAAAAGCTGACCACAATTCCAAAC
TCCGCTACCTAACAAACCTTCAAGCTCATAAAACCCTCCGCTACCTAACA
AACCTTCAAGCTCATAAAACCCTCCCATAACATAAACTGGTAGATCTGAA
TCTCCAGGTTTTGAATTAGGCCAAACCAACAAGTTTCTCACTTATCTCCC
AGACTTTACGTGCCTTCTCAACGTCACTAGCTTCCTGAGACAACTGATTC
TCAAATGAAGCTGAGTCCTTGTTCCAGCTCCAGTAAACACCTGATTTTGT
CAAGCTTGGATCGCTCACAACCTGAGCAAGTCTTTTTCCAGCTTCATCTT
CAGAGACATAACCCTTGGTGATGTACTTTTGGAATGGGGGGAAGAGAAGT
CTGAACAAGGGAATGTGCTCCCTGAACAAGCCTGTTGTGGCAATGCAGCC
AGGGTAAAGGGAAGCGAATGCGATGCCAGTTTCCTCGTGGAACCGCCTGT
GAAACTCTTGCATGGTAAGCATGTTGCAGACTTTGCTGTCCTTGTAGGCC
TTGGCACCGTCAAAATCTCCACCGTCAATCATGGATGAGCTGTTTAGCCC
ATTTAAGCCTCCAGCAAATCCCCTTAAGTCCCCAAGGTTGGCCTTAGGAN
GTACATTACCAGCCAAGGTATTTGTGTTTCCTGTG
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