DC887345

Overview
NameDC887345
Unique NameDC887345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig673 contig Csv1_Contig673:256..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887345 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.005e-59
Identity = 113/151 (74.83%), Postives = 127/151 (84.11%), Query Frame = -1
Query:  178 AHQFDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFT 630
            A  FDLT +NVDLVLEDVRP+LI+DGGN+           +KLQGAC SCPSS+TTM+MGIERVLKEKFGDA+KDIRQV+DEEV++ TVEAVN HLDILRPAIKNYGGSVEVLSVE  DC+VKYVGP+SI  GI+AAIKEKF DI NV FT
Sbjct:   80 AQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPAIKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKDISNVTFT 230          
BLAST of DC887345 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.051e-19
Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = -1
Query:  187 LTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRP-AIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAI----KEKFPDIENV 615
            LT +NV+ VL+++RPYL++DGGN+           VKLQGACGSCPSST TM MGIER L EK  + +  +  + DEE   E   E +   L+ +RP  I    GS++++ +E     ++  GP +    +R A+    +EK P I  V
Sbjct:   85 LTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVA-VEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAV 232          
BLAST of DC887345 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.540e-18
Identity = 61/154 (39.61%), Postives = 84/154 (54.55%), Query Frame = -1
Query:  187 AHQFDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRPAIKNY-GGSVEVLSVESGDCIVKYVGPDSIASGIRAAI----KEKFPDIENV 630
            A Q  LTA NV+ VL+ VRPYL ADGG++           +KLQGACGSCPSS  T+  GIER L EK  D +  +  V D+E   E   E V   L+ +RP +    GG ++ L ++     V+  GP ++   +R A+    +EK P I+ V
Sbjct:   70 AVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPD-VAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIV 222          
BLAST of DC887345 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.882e-16
Identity = 52/139 (37.41%), Postives = 78/139 (56.12%), Query Frame = -1
Query:  208 LTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV--RETTVEAVNGHLDILRPAIKNY-GGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEK 615
            LT +NV+ VL++VRP L+ADGGN+           +KLQGACGSCPSS+ T+ MGIE  L++K  + I  + Q  + E    E   E +   L  LRP +    GG +E++ ++     V+  GP +    +R A+ +K
Sbjct:   84 LTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPE-IMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQK 221          
The following BLAST results are available for this feature:
BLAST of DC887345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NIFU1_ARATH4.005e-5974.83NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
NIFU2_ARATH4.051e-1939.60NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ1.540e-1839.61NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH1.882e-1637.41NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionDC887345 EIC Citrus sinensis cDNA clone EIC0237 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887345 ID=DC887345; Name=DC887345; organism=Citrus sinensis; type=EST; length=630bp
TCAAGGTTCGACATTCTCAACCGGAGGAGTGAGACACCCTGAATACAAGA
AGTATACGCATGTCAATAAATCAGCCACAAACCCAAAACTCATTGTAAAC
AAGTGATCTTGAACCTCATAAAATGTACAACAGATTGTTTTTACTTTTGA
GTCTATGATACTAAGAGCAACCTAGTCAGTGAAGACAACATTCTCAATAT
CTGGGAACTTCTCTTTGATGGCTGCTCTAATGCCCGATGCAATGGAATCA
GGCCCCACATACTTTACAATGCAATCCCCACTCTCAACAGATAACACTTC
CACGCTTCCACCATAATTCTTAATGGCAGGTCTCAGTATATCAAGGTGAC
CATTTACTGCCTCAACTGTGGTCTCTCTTACTTCTTCATCATACACTTGG
CGGATATCCTTGATTGCATCTCCAAATTTTTCCTTCAATACTCTCTCAAT
TCCCATCGACATGGTTGTTGTTGAGCTCGGGCAGCTGCCACATGCTCCTT
GGAGCTTGACAGAGACGACGCCGTCTTCAACGGAAACAACGTCGATGTTT
CCTCCATCGGCGATCAAATAAGGCCGCACGTCTTCGAGAACAAGGTCGAC
GTTTTTAGCCGTGAGGTCGAACTGGTGGGC
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