DC887340

Overview
NameDC887340
Unique NameDC887340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7438 contig Csv1_Contig7438:407..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887340 vs. ExPASy Swiss-Prot
Match: Y3918_ARATH (B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.826e-22
Identity = 48/118 (40.68%), Postives = 77/118 (65.25%), Query Frame = -3
Query:   63 MIDDLYDHAKVNSPVIERAEEVRANLAPSYPSFWKAMVKSNVSHGFWLHLPMRFCKFNMPKIDTVFIVENESGEEYKINYISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRFKV 416
            +++ +Y          +RAE+++++L   Y SF K M++S+V+ GFWL LP+ FCK +MPK D +  + +E  EE +  Y++Q+  LSGGW+ F+  +QL +GD +VFHL+  T FKV
Sbjct:   98 LLNRVYASDDARMYAFDRAEKLQSSLDSEYASFTKPMLQSHVTGGFWLGLPLPFCKAHMPKRDVIMTLVDEEEEESQAKYLAQKNGLSGGWRGFAIDHQLVDGDAVVFHLIARTTFKV 215          
BLAST of DC887340 vs. ExPASy Swiss-Prot
Match: Y5814_ORYSJ (B3 domain-containing protein Os05g0481400 OS=Oryza sativa subsp. japonica GN=Os05g0481400 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = -3
Query:   63 ERAEEVRANLAPSYPSFWKAMVKSNVSHGFWLHLPMRFCKFNMPKIDTVFIVENESGEEYKINYISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRFKV 368
            ++AE ++ +L P  PSF K MV+S+VS  FWL LP RFCK ++P  +   ++E+E G E+   YI  RT LSGGW+ F+  + L +GD LVF L EP RFK+
Sbjct:  123 KKAERLQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKI 224          
BLAST of DC887340 vs. ExPASy Swiss-Prot
Match: Y5270_ARATH (B3 domain-containing protein At5g42700 OS=Arabidopsis thaliana GN=At5g42700 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = -3
Query:   63 MIDDLYDHAKVNSPVIERAEEVRANLAPSYPSFWKAMVKSNVSHGFWLHLPMRFCKFNMPKIDTVFIVENESGEEYKINYISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRFKV 416
            +++ +Y   ++    I RA + +  L   YPSF K+M++S+VS GFWL LP++FCK ++   D V  + +E GEEY+  Y++++  LSGGW  F+ A+ L  GD LVF LV  T FKV
Sbjct:   78 LLNRVYVSEEIRDEAISRANKFQDELGSGYPSFVKSMLQSHVSGGFWLGLPVQFCKSHLGLHDGVITLIDEEGEEYETIYLARKNGLSGGWMGFAVAHNLAYGDTLVFELVRRTAFKV 195          
BLAST of DC887340 vs. ExPASy Swiss-Prot
Match: Y3845_ORYSJ (B3 domain-containing protein Os03g0184500 OS=Oryza sativa subsp. japonica GN=Os03g0184500 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = -3
Query:   63 RAEEVRANLAPSYPSFWKAMVKSNVSHGFWLHLPMRFCKFNMPKIDTVFIVENESGEEYKINYISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRFKV 365
            +AEE+ + L P +PSF K M+ S+V  GFWL LP  FC+  +PK D +  + +E  E++  NY++ +  LSGGW  F+  + L +GD  VF LV+PT FKV
Sbjct:  122 KAEELESQLDPEFPSFVKPMLHSHVVRGFWLGLPRHFCETYLPKHDAIVTLLDEKDEQFDTNYLAYKNGLSGGWAGFALDHGLLDGDATVFQLVKPTTFKV 222          
BLAST of DC887340 vs. ExPASy Swiss-Prot
Match: Y1341_ORYSJ (B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = -3
Query:   63 IERAEEVRANLAPSYPSFWKAMVKSNVSHGFWLHLPMRFCKFNMPKIDTVFIVENESGEEYKINYISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRFKV 371
            ++RA+E++  L   +PSF K M+ S+V  GFWL LP  FC   +PK DT  ++E+E+G  +  NY+  +  LS GW+ F+  + +  GDV+VF LV  T+FKV
Sbjct:  135 MKRAQEIQTKLPAEHPSFVKHMLHSHVVSGFWLGLPAGFCNKYLPKHDTDIVLEDENGNNHNTNYLGGKQGLSAGWRGFAINHDIKVGDVVVFELVSTTKFKV 237          
BLAST of DC887340 vs. ExPASy Swiss-Prot
Match: Y5828_ARATH (Putative B3 domain-containing protein At5g58280 OS=Arabidopsis thaliana GN=At5g58280 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = -3
Query:   63 AEEVRANLAPSYPSFWKAMVKSNVSHGFWLHLPMRFCKFNMPKIDTVFIVENESGEEYKINYISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRFKV 362
            AE+ + +L   +P F K+MV+S+V   FWL LP RFC  N P+      +E+E GE Y+  YI +R  LSGGWK F+  ++L +GD L+F LVEP +FK+
Sbjct:  113 AEKFQRSLKSPHPYFVKSMVRSHVYSCFWLGLPSRFCADNFPEETMEIELEDEEGEVYEAVYIGRRAGLSGGWKRFALDHKLDDGDALLFELVEPKKFKI 212          
BLAST of DC887340 vs. ExPASy Swiss-Prot
Match: Y6944_ORYSJ (B3 domain-containing protein Os06g0194400 OS=Oryza sativa subsp. japonica GN=Os06g0194400 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = -3
Query:   63 IERAEEVRANLAPSYPSFWKAMVKSNVSHGFWLHLPMRFCKFNMPKIDTVFIVENESGEEYKINYISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRFKV 371
            I  A+E+   L   YP F K M++S+V+ GFWL LP  F +  +PK D    + +E  +E+   Y++ +  LSGGW+ FS A++L +GD LVF L++ T+FKV
Sbjct:  122 INAAQELEEELGSDYPIFVKPMLQSHVTGGFWLSLPTHFSRKYLPKRDETIRLVDEEDDEFDTLYLANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQRTKFKV 224          
The following BLAST results are available for this feature:
BLAST of DC887340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y3918_ARATH2.826e-2240.68B3 domain-containing protein At3g19184 OS=Arabidop... [more]
Y5814_ORYSJ8.222e-2248.04B3 domain-containing protein Os05g0481400 OS=Oryza... [more]
Y5270_ARATH1.402e-2142.37B3 domain-containing protein At5g42700 OS=Arabidop... [more]
Y3845_ORYSJ2.645e-2044.55B3 domain-containing protein Os03g0184500 OS=Oryza... [more]
Y1341_ORYSJ1.714e-1942.72B3 domain-containing protein Os01g0234100 OS=Oryza... [more]
Y5828_ARATH8.508e-1946.00Putative B3 domain-containing protein At5g58280 OS... [more]
Y6944_ORYSJ2.476e-1841.75B3 domain-containing protein Os06g0194400 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionDC887340 EIC Citrus sinensis cDNA clone EIC0231 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887340 ID=DC887340; Name=DC887340; organism=Citrus sinensis; type=EST; length=613bp
TAAAATCAAGGATTTACACGAAAATTGTAACATGTACATATAGAACATAA
AGATCTGAGTGTCACCTTAAACCTTGTAGGTTCAACCAAATGGAAAACTA
AAACATCGCCCTCATATAATTGGTTTGCATCAGAAAATGCTTTCCATCCA
CCACTCAATGCTGTCCTTTGGGAAATATAATTTATTTTGTATTCTTCCCC
ACTTTCATTTTCCACAATAAATACTGTATCAATCTTTGGCATGTTGAATT
TGCAGAATCGCATGGGAAGATGCAGCCAAAATCCATGACTAACATTTGAC
TTAACCATAGCTTTCCAAAAGCTTGGGTAGCTAGGTGCTAAGTTTGCTCG
AACCTCTTCTGCTCGCTCTATTACCGGCGAATTAACTTTGGCATGATCAT
AGAGGTCATCAATCATAGCTCTCTTCCGTCTACTTTTAGACTCCTTTGAA
CTATCAAATGCTCCCTGGGTTAGCTTCATCTTGCTCTCAGCTGTCTTCTT
TCTCTTAATCTTGGTGGTTTGGAGAAGAGGGGTTTCTGGCTCTGATTGCT
CTTCCATTACAACAAAAGCGGGGGAGGGTTTCAGTTCTGAAACTGAATCT
GCAGAAGTCCTGT
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