DC887337

Overview
NameDC887337
Unique NameDC887337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:1293..1748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887337 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.561e-11
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = -3 
Query:  362 YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 454
            YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG
Sbjct:  406 YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of DC887337 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.561e-11
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = -3 
Query:  362 YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 454
            YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG
Sbjct:  406 YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
The following BLAST results are available for this feature:
BLAST of DC887337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EF1A_SOYBN5.561e-11100.00Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ORYSJ5.561e-11100.00Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionDC887337 EIC Citrus sinensis cDNA clone EIC0224 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887337 ID=DC887337; Name=DC887337; organism=Citrus sinensis; type=EST; length=456bp
GAAACGAAAGTAGATATCAATTCCGCAGAAACAACACAATGACAAAACTT
CTGAGCCGATTCAGATGAAACCGAACCACCTCAAGTATCAATACAAACAA
AGACCATAACTATTAATAAAATTGAGACTCCAGGTTAGAGCTGCGCCACC
GCCTGTCAAGCACCCAATTCTGGGAATCGGTACCCGACACCAAAGGCAAC
AAACTAAAACCTAAAAAGGAAAGCATGCATCGAACTATAACAGTACCAAA
AATAACCAAGTTTGTATAACTACAATTATTAAAATAGACTCCATCTGCGG
ATAAAGCAACATTAACCAACCCGATTCACTTCTTCTTGGCTGCAGACTTG
GTGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACC
AACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTG
GGTAGT
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