DC887328

Overview
NameDC887328
Unique NameDC887328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10123 contig Csv1_Contig10123:1390..1841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALA2_PANMI (Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 5.956e-42
Identity = 80/116 (68.97%), Postives = 92/116 (79.31%), Query Frame = -3
Query:  103 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKFRN 450
            IL SLARRAK LEDAFN+LEGI+CNKAEGAMYLFP+I LP             PDAFY  RLL +TGIV+VPGSGFGQVPGTWH RCTILPQEDKIPA++TR   FH++FM ++R+
Sbjct:  367 ILQSLARRAKALEDAFNNLEGISCNKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHIRCTILPQEDKIPAVITRFKAFHEAFMAEYRD 482          
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.733e-41
Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = -3
Query:  103 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKFRN 450
            IL+SLARRAK LE AFN LEGITCN+AEGAMY+FP+I LP             PDAFY  RLL +TGIV+VPGSGFGQVPGTWHFRCTILPQEDKIPA+++R T FH++FM ++R+
Sbjct:  367 ILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 482          
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALAM_DICDI (Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.245e-31
Identity = 62/115 (53.91%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  106 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKFR 450
            I  SL +RA  L +A N+LEG+TCN +EGAMY FP+I+LP             PDA+YC +LL ATGI +VPGSGFGQ  GTWHFR T LP E+ I  +  R+ DFH+SFM+K++
Sbjct:  420 IYESLKKRANLLTNALNNLEGVTCNPSEGAMYAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLPSEEAIEGVCKRIADFHQSFMNKYK 534          
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALAT2_MOUSE (Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.424e-27
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = -3
Query:  109 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 450
            +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P          K  PD FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  DK+  ++ ++ DFH  F++++
Sbjct:  408 VLGNLAKKAKLTEDLFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQSHKMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVDKLKTVLHKVKDFHLKFLEQY 521          
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALAT2_HUMAN (Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.860e-27
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = -3
Query:  109 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 450
            +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P          +  PD FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ ++ DFH +F++K+
Sbjct:  409 VLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEKY 522          
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALAT2_DANRE (Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.860e-27
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  109 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 450
            +LS+LA +AK  E   N++ GI+CN  +GAMY FPRI LP             PD FYC +LL  TGI LVPGSGFGQ  GT+HFR TILP  DK+  ++ +L DFH+ F  ++
Sbjct:  435 VLSALAEKAKLTEQILNTVPGISCNPVQGAMYSFPRITLPERAISEAKAKGQAPDMFYCMKLLEETGICLVPGSGFGQREGTYHFRMTILPPTDKLKLMLNKLKDFHQRFTQQY 548          
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALAT2_XENLA (Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.144e-27
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  109 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 450
            +L++LA +A+  E+  N   GI CN  +GAMY FPRI +P             PD F+C +LL  TGI +VPGSGFGQ  GT HFR TILP  DK+ +++ RL DFH+ FMD++
Sbjct:  426 VLNNLAEKARLTEEILNQAPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFMDEY 539          
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALAT2_XENTR (Alanine aminotransferase 2 OS=Xenopus tropicalis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.021e-25
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = -3
Query:  109 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 450
            +L +LA +A+  E+  N   GI CN  +GAMY FPRI +P             PD F+C +LL  TGI +VPGSGFGQ  GT HFR TILP  DK+ +++ RL DFH+ F +++
Sbjct:  410 VLGNLAEKARLTEEILNQSPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFTEEY 523          
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALAT1_BOVIN (Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.333e-25
Identity = 54/114 (47.37%), Postives = 70/114 (61.40%), Query Frame = -3
Query:  109 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 450
            +L+ LA +AK  E  FN   GI CN  +GAMY FPR+QLP             PD F+C RLL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F  ++
Sbjct:  382 VLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPRVQLPPRAVQRAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPMEKLRPLLEKLSQFHAKFTREY 495          
BLAST of DC887328 vs. ExPASy Swiss-Prot
Match: ALAT1_HUMAN (Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 2.274e-25
Identity = 54/110 (49.09%), Postives = 69/110 (62.73%), Query Frame = -3
Query:  121 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSF 450
            +L+ LA +AK  E  FN   GI+CN  +GAMY FPR+QLP             PD F+C RLL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F
Sbjct:  382 VLAELAAKAKLTEQVFNEAPGISCNPVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPLEKLRLLLEKLSRFHAKF 491          
The following BLAST results are available for this feature:
BLAST of DC887328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ALA2_PANMI5.956e-4268.97Alanine aminotransferase 2 OS=Panicum miliaceum PE... [more]
ALA2_HORVU1.733e-4168.10Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]
ALAM_DICDI1.245e-3153.91Probable alanine aminotransferase, mitochondrial O... [more]
ALAT2_MOUSE1.424e-2749.12Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2... [more]
ALAT2_HUMAN1.860e-2748.25Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2... [more]
ALAT2_DANRE1.860e-2750.00Alanine aminotransferase 2-like OS=Danio rerio GN=... [more]
ALAT2_XENLA4.144e-2748.25Alanine aminotransferase 2 OS=Xenopus laevis GN=gp... [more]
ALAT2_XENTR1.021e-2546.49Alanine aminotransferase 2 OS=Xenopus tropicalis G... [more]
ALAT1_BOVIN1.333e-2547.37Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE... [more]
ALAT1_HUMAN2.274e-2549.09Alanine aminotransferase 1 OS=Homo sapiens GN=GPT ... [more]

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Properties
Property NameValue
Genbank descriptionDC887328 EIC Citrus sinensis cDNA clone EIC0209 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887328 ID=DC887328; Name=DC887328; organism=Citrus sinensis; type=EST; length=452bp
GNCGCTTTGTCNTTCACTCTGTAAACGTTTGACAATTGAAATGAATGGCT
ACACATTATTTTTCTGAACTCAGTCTCGTATTATTATGCAGAAGATCTTT
CAATTACGGAATTTGTCCATGAAACTTTTATGGAAGTCTGTCAGCCGGGT
CACAATCGCTGGAATCTTGTCCTCTTGAGGCAATATGGTGCACCTAAAAT
GCCAAGTGCCGGGGACCTGCCCAAAACCAGAACCAGGAACAAGAACAATT
CCAGTGGCATTGAGAAGGCGGCGACAATAAAATGCATCTGGAACAGTTTT
TTCAGCTTCAGCAGCTTTAATTGCCTTTTCAGGCAGTTGAATACGAGGAA
AGAGATACATTGCTCCTTCAGCCTTGTTACATGTTATTCCTTCCAAACTG
TTAAATGCATCTTCCAATGTCTTTGCACGCCTGGCTAAAGATGAGAGGAT
TC
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