DC887324

Overview
NameDC887324
Unique NameDC887324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:746..1473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.811e-86
Identity = 158/165 (95.76%), Postives = 163/165 (98.79%), Query Frame = -3
Query:  232 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKE 726
            IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA+GIAKHGEIDYEA+VKL EGFNGADLRN+CTEAGM AIRAERDYVIHEDFMKAVRKL+EAKKLESS+HYNADFGKE
Sbjct:  235 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHYNADFGKE 399          
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.978e-86
Identity = 158/165 (95.76%), Postives = 163/165 (98.79%), Query Frame = -3
Query:  232 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKE 726
            IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRM+ILKIHAAGIAKHGEIDYEA+VKLAEGFNGADLRN+CTEAGM AIRAERDYVIHEDFMKAVRKL+EAKKLESS+HYNADFGKE
Sbjct:  235 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHYNADFGKE 399          
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.523e-71
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = -3
Query:  253 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 726
            +IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L KVK+IMATNRPDVLDPALLRPGRLDRKIEIPLPNE  R+++LKIHAA I KHG++DYEA+ KLA+GFN ADLRNVCTEAGM AIRAERDYV+ EDFMKAVRK  EAKKLE    Y
Sbjct:  233 VIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKKLEGKLDY 390          
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.114e-69
Identity = 131/158 (82.91%), Postives = 145/158 (91.77%), Query Frame = -3
Query:  253 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 726
            I+FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD LGKVK+IMATNRPD LDPALLRPGRLDRKIEI LPNEQSR+EILKIH+  I KHGEID+EAVVKL++GF+ ADLRNVCTEAGM AIRAER++VI EDFMKAVRK+ +AK+LE+   Y
Sbjct:  246 IVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVGDAKRLETKLDY 403          
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.482e-69
Identity = 129/158 (81.65%), Postives = 143/158 (90.51%), Query Frame = -3
Query:  253 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 726
            IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMKAVRK+ ++KKLES   Y
Sbjct:  229 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386          
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.482e-69
Identity = 129/158 (81.65%), Postives = 143/158 (90.51%), Query Frame = -3
Query:  253 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 726
            IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMKAVRK+ ++KKLES   Y
Sbjct:  229 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386          
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.482e-69
Identity = 129/158 (81.65%), Postives = 143/158 (90.51%), Query Frame = -3
Query:  253 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 726
            IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMKAVRK+ ++KKLES   Y
Sbjct:  229 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386          
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.609e-68
Identity = 128/158 (81.01%), Postives = 142/158 (89.87%), Query Frame = -3
Query:  253 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 726
            IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++GFNGADL NVCTEAGM AIRA+ D+V+ EDFMKAVRK+ ++KKLES   Y
Sbjct:  229 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386          
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.534e-63
Identity = 120/158 (75.95%), Postives = 133/158 (84.18%), Query Frame = -3
Query:  253 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 726
            +IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD LG+ K+IMATNRPD LDPALLRPGRLDRKIEIPLPNE  RMEILKIH   ++K GEIDYEA+VKL +G NGADLRNV TEAG  AI+ +RDYVI  D M A RK+ + KKLE +  Y
Sbjct:  228 VIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDY 385          
BLAST of DC887324 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 235.343 bits (599), Expect = 2.488e-61
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = -3
Query:  253 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 726
            IIFMDE+DAIGGRRFSEGTSADREIQRTLMELL Q+DGFD LG+ K+IMATNRPD LDPALLRPGRLDRK+EIPLPNE  R+EI KIH A + K GE D+EA VK+++GFNGAD+RN  TEAG  AIR +RD++  +D MKAVRK+ E KKLE +  Y
Sbjct:  277 IIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEY 434          
The following BLAST results are available for this feature:
BLAST of DC887324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 324
Match NameE-valueIdentityDescription
PS10B_ARATH3.811e-8695.7626S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH4.978e-8695.7626S protease regulatory subunit 10B homolog A OS=A... [more]
PRS10_DICDI4.523e-7182.9126S protease regulatory subunit S10B OS=Dictyostel... [more]
PRS10_CAEEL1.114e-6982.91Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS10_SPETR2.482e-6981.6526S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE2.482e-6981.6526S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN2.482e-6981.6526S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN1.609e-6881.0126S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS10_SCHPO4.534e-6375.95Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS10_YEAST2.488e-6172.1526S protease subunit RPT4 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionDC887324 EIC Citrus sinensis cDNA clone EIC0199 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887324 ID=DC887324; Name=DC887324; organism=Citrus sinensis; type=EST; length=728bp
AACACAGTTGTCTGAGAATCGGTGGAAATCACTGAAACCATTAAGACATT
AAAGATGTGCAACAATTTCTGACGTAAATGATTGTTATAATATATAGAGC
ATTCCATCGCTCAAAGAACCACTAACTTCACAAATTAAAGCAAGATGTTT
TAACAAAAATATGAAAACAATTACATCTGAAAAATAACCGCACTGCCTCA
AGATCCTTGGCTCTTTTCCTAAATGTTTTTACTCTTTTCCAAAATCAGCA
TTGTAGTGAGCACTTGATTCAAGTTTCTTTGCCTCGTTCAGTTTCCGGAC
AGCCTTCATAAAATCTTCGTGGATGACATAATCACGTTCAGCACGGATTG
CCGACATTCCAGCCTCGGTGCAAACATTTCGGAGATCAGCCCCATTAAAG
CCCTCTGCAAGCTTCACAACAGCCTCATAATCAATCTCACCATGCTTAGC
AATGCCAGCAGCATGAATTTTAAGAATTTCCATTCTTGACTGCTCATTTG
GCAATGGAATCTCAATTTTCCTATCCAGTCGCCCTGGACGAAGAAGTGCA
GGGTCAAGGACATCAGGTCTGTTAGTGGCCATTATCATTTTAACCTTCCC
AAGCTGATCAAATCCATCAAGCTGATTAAGTAACTCCATCAGTGTCCTTT
GAATTTCACGATCTGCACTGGTTCCTTCACTAAAACGGCGTCCACCGATG
GCATCAATTTCATCCATAAAAATGATGC
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