DC887322

Overview
NameDC887322
Unique NameDC887322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887322_ssr440 microsatellite DC887322_ssr440:440..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DC887322_ssr500 microsatellite DC887322_ssr500:500..511. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5597 contig Csv1_Contig5597:1..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887322 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.703e-31
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 2
Query:  104 VEADEHTVNSSKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            ++ D+ T N+     Y    IDCGGAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   24 IQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of DC887322 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.008e-28
Identity = 58/82 (70.73%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  101 LVEADEHTVNSSKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            LV+AD    NS K  GY K  IDCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   20 LVQADVE--NSQKKNGYAKK-IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of DC887322 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.479e-24
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  128 NSSKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            +S  G G  K  IDCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   29 DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of DC887322 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.479e-24
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  107 EADEHTVNSSK-GTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            E   H  + +K G G  K  IDCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   21 ELHVHAADGAKVGEGVVK--IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of DC887322 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 32/73 (43.84%), Postives = 37/73 (50.68%), Query Frame = 2
Query:  128 NSSKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            N  +G    +PT DC   C  RC  +S    C   C  CCA C CVP G  GN + CPCY N  T  G+ KCP
Sbjct:   25 NVVEGYNKLRPT-DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of DC887322 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 2
Query:  134 SKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            S+G  +P+   DC   C  RC  +S    C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   45 SEGRLHPQ---DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of DC887322 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 2
Query:  170 CGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            C   C+ RC  +   + C + CG CC  C CVP GT GN   CPCY +     G+ KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of DC887322 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 30/69 (43.48%), Postives = 34/69 (49.28%), Query Frame = 2
Query:  140 GTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 346
            G G  K T  C   C  RC+ +     C   C  CC +C CVPPG  GN +VC CY N  T  G  KCP
Sbjct:   39 GPGSLKRT-QCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
The following BLAST results are available for this feature:
BLAST of DC887322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SNAK2_SOLTU3.703e-3167.90Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH1.008e-2870.73Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH7.479e-2465.75Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH7.479e-2460.49Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
RSI1_SOLLC1.463e-1143.84Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GAST1_SOLLC2.495e-1145.07Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
SNAK1_SOLTU5.559e-1142.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GASA4_ARATH7.260e-1143.48Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionDC887322 EIC Citrus sinensis cDNA clone EIC0197 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887322 ID=DC887322; Name=DC887322; organism=Citrus sinensis; type=EST; length=565bp
GAAAAGAAGAGAAGCAGACACTAAGCATAACTATTTGTAAGCCATGGCCA
TCTCCAAAGCTCTTATTGCTTCAGTCCTCCTCTCACTACTTGTTTTTCAT
CTCGTTGAAGCTGATGAGCATACGGTTAACTCAAGCAAAGGAACTGGTTA
TCCAAAACCAACAATTGACTGTGGAGGTGCATGCCAGGCCAGGTGCCGAT
TATCGTCGAGGCCAAACCTGTGCCACAGGGCATGTGGTACCTGCTGCGCC
CGTTGCAATTGTGTTCCTCCAGGCACTGCAGGCAACACTGAGGTCTGCCC
TTGCTACGCCAATATGACCACCCACCATGGCAGACGCAAGTGCCCTTGAA
GTATTTTAAGTTGAAAGGACGTCGTCTACTTTCTTAATTAATTTTTTTGG
AGCTTACATTCTCTCTTTCTCTCTATATATGTATAAATATGTGTGTGTGC
GTGTGTGTTGCCTGTGGCCAGGAAAACAGAGTTGATCCATATTCCTATGA
ATAAATAAATAAATCCATTTCATGTTACTTATTTGTGGATACATAAGTTT
CGAGAGAATAATAAT
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