DC887317

Overview
NameDC887317
Unique NameDC887317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1534 contig Csv1_Contig1534:7..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.286e-47
Identity = 98/140 (70.00%), Postives = 109/140 (77.86%), Query Frame = -3
Query:  108 MSSEAAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 527
            MSS  A  KGGRG++K TK VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                 AGNAARDNKKNRI+PRHIQLAV+NDEE SKLLG+VTIANGGVLPNIHQ LLPKK+   KGEIGS SQEF
Sbjct:    1 MSSSGA--KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.286e-47
Identity = 96/138 (69.57%), Postives = 105/138 (76.09%), Query Frame = -3
Query:  108 SEAAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 521
            S  A TKGGRG+ K +K VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                 AGNAARDNK NRI+PRHIQLAV+NDEE SKLLGSVTIANGGVLPNIHQ LLPKK    KGEIGS SQEF
Sbjct:    2 SSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.475e-46
Identity = 97/142 (68.31%), Postives = 107/142 (75.35%), Query Frame = -3
Query:  108 MSSEAAA--TKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 527
            MSS A +  TKGGRG+ K TK VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                 AGNAARDNKK RI+PRHIQLAV+NDEE SKLLGSVTIANGGVLPNIHQ LLP K    KG+IGS SQEF
Sbjct:    1 MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.844e-46
Identity = 93/136 (68.38%), Postives = 103/136 (75.74%), Query Frame = -3
Query:  108 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 515
            +  TKGGRG+ K TK VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P                 AGNAARDNKK RI+PRHIQLAV+NDEE SKLLGSVTIANGGVLPNIHQ LLP K    KG+IGS SQEF
Sbjct:    7 SGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.715e-43
Identity = 89/136 (65.44%), Postives = 103/136 (75.74%), Query Frame = -3
Query:  108 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 515
            +A   GGRG+SK +K VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P                 AGNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VTIA GGVLPNIHQ LLPKK    K +IGS SQEF
Sbjct:    3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.715e-43
Identity = 89/136 (65.44%), Postives = 103/136 (75.74%), Query Frame = -3
Query:  108 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 515
            +A   GGRG+SK +K VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P                 AGNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VTIA GGVLPNIHQ LLPKK    K +IGS SQEF
Sbjct:    3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.141e-41
Identity = 88/131 (67.18%), Postives = 101/131 (77.10%), Query Frame = -3
Query:  108 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 500
            GGRG++K TK VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P                 AGNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VTIA GGVLPNI Q LLPKK    KG+IGS SQEF
Sbjct:    8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.141e-41
Identity = 88/131 (67.18%), Postives = 101/131 (77.10%), Query Frame = -3
Query:  108 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 500
            GGRG++K TK VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P                 AGNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VTIA GGVLPNI Q LLPKK    KG+IGS SQEF
Sbjct:    8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.305e-37
Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = -3
Query:  132 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 497
            G+G++   K VSRS KAGLQFPVGR+AR+LKKG+YA+R+G+G+P                 AGNAARDNKKNRI+PRHIQLA++NDEE  KLLG VTIA+GGVLPNIH  LLPKK+   KGE
Sbjct:    5 GKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126          
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.704e-37
Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = -3
Query:  132 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 497
            G+G++   K VSRS KAGLQFPVGR+AR+LKKG+YA+R+G+G+P                 AGNAARDNKKNRI+PRHIQLA++NDEE  KLLG VTIA+GGVLPNIH  LLPKK    KGE
Sbjct:    5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126          
The following BLAST results are available for this feature:
BLAST of DC887317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AX_PICAB5.286e-4770.00Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AX_CICAR5.286e-4769.57Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH4.475e-4668.31Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH5.844e-4668.38Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AXB_ORYSJ2.715e-4365.44Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI2.715e-4365.44Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ1.141e-4167.18Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI1.141e-4167.18Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A4_VOLCA1.305e-3763.11Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A_CHLRE1.704e-3763.11Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]

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Properties
Property NameValue
Genbank descriptionDC887317 EIC Citrus sinensis cDNA clone EIC0192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887317 ID=DC887317; Name=DC887317; organism=Citrus sinensis; type=EST; length=595bp
ATTATCCAAAATGAGATTTACACATATGAAAGTGAAAACCCAAATTCACT
ACATACTTATAAACATAACCCGAAATCGAAGATTCCAGATCCCTAATTAA
ACCCCTAAAACTCCTGAGACACGGATCCAATTTCGCCCTTCCGTGCTGCA
GCTTTCTTCGGCAGCAAGTTCTGATGAATGTTAGGCAACACACCACCATT
AGCGATAGTCACAGAGCCAAGCAGTTTGCTAAACTCCTCGTCGTTTTTCA
CAGCCAACTGAATGTGCCTTGGAATGATTCTGTTCTTCTTGTTGTCCCTC
GCCGCGTTCCCAGCCAACTCCAAAACCTCAGCAGCAAGGTATTCAAGGAC
GGCGGAAAGATAGACGGGAGAGCCGGATCCGACGCGCTGGGCGTATCGGC
CTTTCTTGAGGAAGCGAGCGACACGGCCAACCGGGAACTGGAGACCGGCC
TTGTGGGATCTGGACACCGGTTTCGTGTCCTTGGACCTGCCCCGCCCACC
CTTGGTTGCTGCAGCTTCTGAACTCATGGTTGAGAAATGGGTTTTTCTTT
TGAGGAAGATTGAGAGTTTTGAATAAATTCGAAGCGGTTTGCGAT
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