DC887317
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.286e-47 Identity = 98/140 (70.00%), Postives = 109/140 (77.86%), Query Frame = -3 Query: 108 MSSEAAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 527 MSS A KGGRG++K TK VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P AGNAARDNKKNRI+PRHIQLAV+NDEE SKLLG+VTIANGGVLPNIHQ LLPKK+ KGEIGS SQEF Sbjct: 1 MSSSGA--KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.286e-47 Identity = 96/138 (69.57%), Postives = 105/138 (76.09%), Query Frame = -3 Query: 108 SEAAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 521 S A TKGGRG+ K +K VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P AGNAARDNK NRI+PRHIQLAV+NDEE SKLLGSVTIANGGVLPNIHQ LLPKK KGEIGS SQEF Sbjct: 2 SSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 4.475e-46 Identity = 97/142 (68.31%), Postives = 107/142 (75.35%), Query Frame = -3 Query: 108 MSSEAAA--TKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 527 MSS A + TKGGRG+ K TK VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P AGNAARDNKK RI+PRHIQLAV+NDEE SKLLGSVTIANGGVLPNIHQ LLP K KG+IGS SQEF Sbjct: 1 MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 5.844e-46 Identity = 93/136 (68.38%), Postives = 103/136 (75.74%), Query Frame = -3 Query: 108 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 515 + TKGGRG+ K TK VSRS KAGLQFPVGR+ARFLK G+YA+RVG+G+P AGNAARDNKK RI+PRHIQLAV+NDEE SKLLGSVTIANGGVLPNIHQ LLP K KG+IGS SQEF Sbjct: 7 SGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.715e-43 Identity = 89/136 (65.44%), Postives = 103/136 (75.74%), Query Frame = -3 Query: 108 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 515 +A GGRG+SK +K VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P AGNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VTIA GGVLPNIHQ LLPKK K +IGS SQEF Sbjct: 3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.715e-43 Identity = 89/136 (65.44%), Postives = 103/136 (75.74%), Query Frame = -3 Query: 108 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 515 +A GGRG+SK +K VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P AGNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VTIA GGVLPNIHQ LLPKK K +IGS SQEF Sbjct: 3 SAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.141e-41 Identity = 88/131 (67.18%), Postives = 101/131 (77.10%), Query Frame = -3 Query: 108 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 500 GGRG++K TK VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P AGNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VTIA GGVLPNI Q LLPKK KG+IGS SQEF Sbjct: 8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.141e-41 Identity = 88/131 (67.18%), Postives = 101/131 (77.10%), Query Frame = -3 Query: 108 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 500 GGRG++K TK VSRS KAGLQFPVGR+AR+LK G+YA+RVG+G+P AGNAARDNKKNRI+PRHIQLAV+NDEE S+LLG+VTIA GGVLPNI Q LLPKK KG+IGS SQEF Sbjct: 8 GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG-KGDIGSASQEF 137
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.305e-37 Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = -3 Query: 132 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 497 G+G++ K VSRS KAGLQFPVGR+AR+LKKG+YA+R+G+G+P AGNAARDNKKNRI+PRHIQLA++NDEE KLLG VTIA+GGVLPNIH LLPKK+ KGE Sbjct: 5 GKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126
BLAST of DC887317 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 1.704e-37 Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = -3 Query: 132 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 497 G+G++ K VSRS KAGLQFPVGR+AR+LKKG+YA+R+G+G+P AGNAARDNKKNRI+PRHIQLA++NDEE KLLG VTIA+GGVLPNIH LLPKK KGE Sbjct: 5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126 The following BLAST results are available for this feature:
BLAST of DC887317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887317 ID=DC887317; Name=DC887317; organism=Citrus sinensis; type=EST; length=595bpback to top |