DC887315

Overview
NameDC887315
Unique NameDC887315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887315 vs. ExPASy Swiss-Prot
Match: DPM2_CRIGR (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cricetulus griseus GN=DPM2 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.377e-17
Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = -2
Query:  257 DRVVGFLLSFISLSIFTYYTFWVIILPXVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVIL 463
            D+VVGF L  +SL IFTYYT WVI+LP +D+ H IH+YFLP+ YA++IP+  G++LL F+ +FI +V+L
Sbjct:    6 DQVVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLIPLATGLLLLLFVGLFITYVML 74          
BLAST of DC887315 vs. ExPASy Swiss-Prot
Match: DPM2_RAT (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Rattus norvegicus GN=Dpm2 PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = -2
Query:  257 DRVVGFLLSFISLSIFTYYTFWVIILPXVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVIL 463
            D+ VGF L  +SL IFTYYT WVI+LP +D+ H IH+YFLP+ YA+++P+ AG++LL F+ +FI +V+L
Sbjct:    6 DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLLPLAAGLLLLLFVGLFITYVLL 74          
BLAST of DC887315 vs. ExPASy Swiss-Prot
Match: DPM2_MOUSE (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Mus musculus GN=Dpm2 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = -2
Query:  257 DRVVGFLLSFISLSIFTYYTFWVIILPXVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVIL 463
            D+ VGF L  +SL IFTYYT WVI+LP +D+ H IH+YFLP+ YA+++P+ AG++LL F+ +FI +V+L
Sbjct:    6 DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLLPLAAGLLLLLFVGLFITYVML 74          
BLAST of DC887315 vs. ExPASy Swiss-Prot
Match: DPM2_HUMAN (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Homo sapiens GN=DPM2 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = -2
Query:  257 DRVVGFLLSFISLSIFTYYTFWVIILPXVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVIL 463
            D+VVG  L  +SL IFTYYT WVI+LP +D+ H IH+YFLP+ YA+ IP+ AG++LL F+ +FI +V+L
Sbjct:    6 DQVVGLGLVAVSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFVGLFISYVML 74          
BLAST of DC887315 vs. ExPASy Swiss-Prot
Match: DPM2_BOVIN (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos taurus GN=DPM2 PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.189e-16
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = -2
Query:  257 DRVVGFLLSFISLSIFTYYTFWVIILPXVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVIL 463
            D+VVG  L  +SL IFTYYT WVI+LP +D+ H IH+YFLP+ YAI IP+ AG +LL F+ IFI +V+L
Sbjct:    6 DQVVGLGLVALSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAIAIPLAAGHLLLLFVGIFITYVML 74          
BLAST of DC887315 vs. ExPASy Swiss-Prot
Match: DPM2_DICDI (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Dictyostelium discoideum GN=dpm2-1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.918e-12
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = -2
Query:  257 MELADRVVGFLLSFISLSIFTYYTFWVIILPXVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVIL 475
            M  +D+ +GF++    + +F YYT WVII P + +DH+I QYFLP+EY IIIP+   VV +  +  F+G V++
Sbjct:    1 MGASDKFIGFVMVLFRIFVFGYYTTWVIITPFIVSDHWIQQYFLPREYGIIIPLVLLVVGITAIGTFLGLVMI 73          
The following BLAST results are available for this feature:
BLAST of DC887315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DPM2_CRIGR3.377e-1756.52Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_RAT4.411e-1755.07Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_MOUSE5.760e-1755.07Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_HUMAN7.523e-1756.52Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_BOVIN2.189e-1659.42Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_DICDI1.918e-1243.84Dolichol phosphate-mannose biosynthesis regulatory... [more]
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Properties
Property NameValue
Genbank descriptionDC887315 EIC Citrus sinensis cDNA clone EIC0185 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887315 ID=DC887315; Name=DC887315; organism=Citrus sinensis; type=EST; length=527bp
GACAGATGTTTTACAGACTGGATTTTATGGTCAGATTAAATCCAAGTTAT
CATTTAGAATTAGTCAAATCAAATTCGAAAAGTTTCCTATTCAACACATT
GACAAATTAAACTAGAGCAGATGCCAAANTGAACCTATCAACAAGCTATT
TGAGAAGCATCTCTACCAAACAAACTAAGCCAACAACCAANGGACAAAAT
TAANTGTGTAGGAAGCATATGAAAACCTTGCATCATGCCTTCTTCTTTTT
GGACTTGAGGATCACAAACCCAATAAATATGCATAAGAAGCAGAGAAGTA
CCACACCAGCAAATACNGGTATAATTATGGCGTATTCTTGAGGTAGGAAA
TATTGGTGGATGAAGTGATCAGTGTCTACAANTGGCAGAATGATGACCCA
AAATGTGTAGTAGGTGAATATTGATAAGCTGATAAAAGATAATAAGAACC
CAACTACTCTGTCCGCTAATTCCATTTCGATTTTCAGCTTCAACTGTCTG
TTAATCGTCNGAAGAATTTTCAATAGC
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