DC887312

Overview
NameDC887312
Unique NameDC887312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2123 contig Csv1_Contig2123:319..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.551e-52
Identity = 109/138 (78.99%), Postives = 112/138 (81.16%), Query Frame = -2 
Query:  222 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKRSRL 635
            CIVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLTL                     AEYQKLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  102 CIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRL 239
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 7.551e-52
Identity = 109/138 (78.99%), Postives = 112/138 (81.16%), Query Frame = -2 
Query:  222 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKRSRL 635
            CIVSPDLSVLNLVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTL                     A+YQKLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  102 CIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.895e-51
Identity = 107/138 (77.54%), Postives = 112/138 (81.16%), Query Frame = -2 
Query:  222 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKRSRL 635
            CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTL                     A+YQKLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  102 CIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.786e-38
Identity = 94/138 (68.12%), Postives = 100/138 (72.46%), Query Frame = -2 
Query:  222 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKRSRL 635
            CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTL                     AEYQKLLA+RLKEQRE+RSESLAKKRSRL
Sbjct:   57 CIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTKW--KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRL 189
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.134e-31
Identity = 77/135 (57.04%), Postives = 90/135 (66.67%), Query Frame = -2 
Query:  231 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKR 635
            CIV  +LSVLNLVI++KGE D+PGLTD+  PR  GPKRAS+IRKLFNLSKEDDVR+YV   RR  T +  K  +KAPKIQRLVTP  L                     AEY KLLA RLKE +E+R E +AK+R
Sbjct:  100 CIVDANLSVLNLVIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 77/135 (57.04%), Postives = 89/135 (65.93%), Query Frame = -2 
Query:  231 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKR 635
            CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                     AEY KLLA R+KE +E+R E +AK+R
Sbjct:  100 CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 77/135 (57.04%), Postives = 89/135 (65.93%), Query Frame = -2 
Query:  231 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKR 635
            CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                     AEY KLLA R+KE +E+R E +AK+R
Sbjct:  100 CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 77/135 (57.04%), Postives = 89/135 (65.93%), Query Frame = -2 
Query:  231 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKR 635
            CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                     AEY KLLA R+KE +E+R E +AK+R
Sbjct:  100 CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 77/135 (57.04%), Postives = 89/135 (65.93%), Query Frame = -2 
Query:  231 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKR 635
            CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                     AEY KLLA R+KE +E+R E +AK+R
Sbjct:  100 CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of DC887312 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.526e-31
Identity = 80/136 (58.82%), Postives = 90/136 (66.18%), Query Frame = -2 
Query:  231 CIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXAEYQKLLATRLKEQRERRSESLAKKR 635
            CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV    R    K GKK  +KAPKIQRLVTP  L                     AEY KLLA R+KE +E+R E +AK+R
Sbjct:  100 CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRKPLNKDGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
The following BLAST results are available for this feature:
BLAST of DC887312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_ASPOF7.551e-5278.9940S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS62_ARATH7.551e-5278.9940S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH4.895e-5177.5440S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_TOBAC2.786e-3868.1240S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_ICTPU1.134e-3157.0440S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]
RS6_RAT1.934e-3157.0440S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE1.934e-3157.0440S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA1.934e-3157.0440S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN1.934e-3157.0440S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN2.526e-3158.8240S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887312 EIC Citrus sinensis cDNA clone EIC0180 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887312 ID=DC887312; Name=DC887312; organism=Citrus sinensis; type=EST; length=702bp
AGCATTCAACAATTAAAATAAACAGAATATCTAATTGCCAAAATCTGGTT
ACATGCCATCAAAACCAAAATGGGGGCGTCTCCCCCAGTCCATAGAGCAC
TCAATCAAAATTACCTCAACCTAATAGAAGTATTCAGCCCTGACTATACT
TAGTTGTTGACCAAAAAGCCACCCTTGTTTCATATCTAAGCCGCAGCAGT
AGATGGCTTAGAAGCAGCAGAGAGCCTGGATCTCTTCTTTGCCAAACTCT
CACTGCGACGTTCACGCTGTTCCTTCAACCGGGTAGCAAGGAGCTTCTGG
TATTCGGCAGCCTCTGCTTTGGCCTTGGCAATTCTCTGCTTCTTCTCAGC
AATTCTGGCGCGCTTCCTCTGCAAAGTCAAAGGAGTCACCAACCTCTGAA
TTTTAGGAGCCTTGCTAACCTTTTTACCAGTTTTGGTTGTAAAGGTCCGA
CGGTATGTGTTGACATACTTCCGAACATCATCTTCTTTGGAAAGGTTAAA
CAACTTCCTGATCTTTGAGGCTCTCTTCGGACCTCTCATCCTGGGCTTCT
CAGTGTCAGTAAGTCCAGGAAGGTCATGTTCTCCCTTTTTCACGATGACC
AAGTTCAACACTGAGAGATCTGGACTAACAATGCATCCACGAACAGATTT
CCTCCGACGCTCTCCATCTCTCCTTCCATATCCACGGGAAGCAAGGAGTA
CC
back to top