FC921896

Overview
NameFC921896
Unique NameFC921896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13549 contig Csv1_Contig13549:2..453. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.780e-23
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 2
Query:    2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKV---GKKVFAYSRPSTF 247
            K+FR+ +R  AVEA+Y DMAARHR+RF SI ILKVVE+E  + +RR Y+KQLL   LKFPLPHR  G V   GKKVFA  RPSTF
Sbjct:   91 KEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175          
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 8.088e-23
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247
            K+ R++SR  AVE LYQDMAARHR+RF SIHILKV EIE    ++R Y+KQ L KDLKFPLPHR   +   K F+Y RPSTF
Sbjct:   92 KEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRV--QKSTKTFSYKRPSTF 171          
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247
            +++R+++ + AV   Y+DM ARHR+R  SIHI+KV EI  N   RRP IKQ     +KFPLPHR   +     F   RP+TF
Sbjct:   95 REYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAAN-KCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTF 175          
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247
            +++R+++   AV   Y+DM ARHR+R  SI I+KV EI  +   RRP +KQ     +KFPLPHR   +  K  F   RP+TF
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175          
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247
            +++R+++   AV   Y+DM ARHR+R  SI I+KV EI  +   RRP +KQ     +KFPLPHR   +  K  F   RP+TF
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175          
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.431e-11
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2
Query:    2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247
            +++R+++   AV   Y+DM ARHR+R  SI I+KV EI      RRP +KQ     +KFPLPHR   +  K  F   RP+TF
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175          
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.431e-11
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2
Query:    2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247
            +++R+++   AV   Y+DM ARHR+R  SI I+KV EI      RRP +KQ     +KFPLPHR   +  K  F   RP+TF
Sbjct:   95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175          
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.441e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247
            +++R+++ + AV   Y+DM ARHR+R  +I I+KV  I  N   RRP IKQ     +KFPLPHR   +  K  F   RP+TF
Sbjct:   95 REYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAAN-KCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175          
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 2
Query:    2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247
            +++R++S   AV   Y+DM ARHR+R  SI I+KV E+    + RRP +KQ     ++FPLP R         FAY RPST+
Sbjct:   95 REYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV-EVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTY 175          
The following BLAST results are available for this feature:
BLAST of FC921896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RL20_SCHPO2.780e-2364.7160S ribosomal protein L20 OS=Schizosaccharomyces p... [more]
RL20_YEAST8.088e-2363.4160S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_SALSA9.909e-1346.3460S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]
RL18A_HUMAN1.096e-1143.9060S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN1.096e-1143.9060S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT1.431e-1143.9060S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE1.431e-1143.9060S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_DANRE2.441e-1143.9060S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
RL18A_SPOFR3.188e-1142.6860S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
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Properties
Property NameValue
Genbank descriptionC06053F07T7 RindPdigS Citrus sinensis cDNA clone C06053F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921896 ID=FC921896; Name=FC921896; organism=Citrus sinensis; type=EST; length=452bp
CAAGGACTTCCGTGAGATGAGCCGCACCGACGCTGTTGAGGCTCTCTACC
AGGACATGGCTGCCCGTCACCGCTCCCGTTTCGGTTCCATCCACATCCTC
AAGGTTGTTGAGATCGAGAACAACGACAGCATCCGCCGCCCCTACATCAA
GCAGCTCCTCCAGAAGGACCTCAAGTTCCCTCTGCCCCACCGTGCCGGTG
GCAAGGTCGGCAAGAAGGTCTTCGCCTACTCTCGCCCCTCTACCTTTGCT
TAAATGTGATGTTCTGGGTGTTGGGCTTGGAGTGTGTGGATGAATGACTG
TTAATGGCCATAGCATGCATGAAAGATGGTCGCGTGGAAACCACCGCCCT
TCACGGGCGAGATGGTTGGATGTCTCTAGTTCCCCGTATGGTGGCATCTT
AGGTTATTTTGAAAAAAATCATCGGGTTTCTTGAAAAAAAAAAAAAAAAA
AA
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