FC921896
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3) HSP 1 Score: 107.457 bits (267), Expect = 2.780e-23 Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 2 Query: 2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKV---GKKVFAYSRPSTF 247 K+FR+ +R AVEA+Y DMAARHR+RF SI ILKVVE+E + +RR Y+KQLL LKFPLPHR G V GKKVFA RPSTF Sbjct: 91 KEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 8.088e-23 Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 2 Query: 2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247 K+ R++SR AVE LYQDMAARHR+RF SIHILKV EIE ++R Y+KQ L KDLKFPLPHR + K F+Y RPSTF Sbjct: 92 KEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRV--QKSTKTFSYKRPSTF 171
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13 Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 2 Query: 2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247 +++R+++ + AV Y+DM ARHR+R SIHI+KV EI N RRP IKQ +KFPLPHR + F RP+TF Sbjct: 95 REYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAAN-KCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTF 175
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247 +++R+++ AV Y+DM ARHR+R SI I+KV EI + RRP +KQ +KFPLPHR + K F RP+TF Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247 +++R+++ AV Y+DM ARHR+R SI I+KV EI + RRP +KQ +KFPLPHR + K F RP+TF Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAS-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.431e-11 Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2 Query: 2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247 +++R+++ AV Y+DM ARHR+R SI I+KV EI RRP +KQ +KFPLPHR + K F RP+TF Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.431e-11 Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2 Query: 2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247 +++R+++ AV Y+DM ARHR+R SI I+KV EI RRP +KQ +KFPLPHR + K F RP+TF Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAG-KCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.441e-11 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247 +++R+++ + AV Y+DM ARHR+R +I I+KV I N RRP IKQ +KFPLPHR + K F RP+TF Sbjct: 95 REYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAAN-KCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
BLAST of FC921896 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11 Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 2 Query: 2 KDFREMSRTDAVEALYQDMAARHRSRFGSIHILKVVEIENNDSIRRPYIKQLLQKDLKFPLPHRAGGKVGKKVFAYSRPSTF 247 +++R++S AV Y+DM ARHR+R SI I+KV E+ + RRP +KQ ++FPLP R FAY RPST+ Sbjct: 95 REYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV-EVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTY 175 The following BLAST results are available for this feature:
BLAST of FC921896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921896 ID=FC921896; Name=FC921896; organism=Citrus sinensis; type=EST; length=452bpback to top |